View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10261A_low_29 (Length: 425)
Name: NF10261A_low_29
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_29 |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0856 (1 HSPs) |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 13 - 425
Target Start/End: Original strand, 2080249 - 2080661
Alignment:
| Q |
13 |
acatcaagaaaaggagataatggagagatctgctatgtaattcttgcttgctcaagagagggatctagactgtcaaaaaattcgttacaaactctcccat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2080249 |
acatcaagaaaaggagataatggagagatctgctatgtaattcttgcttgctcaagagagggatctagactgtcaaaaaattcgttacaaactctcccat |
2080348 |
T |
|
| Q |
113 |
ctaaggnnnnnnnttgtccagccaagatttgcattaagttggaagacgatggtttgtggtacattaaaagatttgaatctagccattctcacgagactac |
212 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2080349 |
ctaaggaaaaaaattgtccagccaagatttgcattaagttggaagacgatggtttgtggtacattaaaagatttgaatctagccattctcacgagactac |
2080448 |
T |
|
| Q |
213 |
ccctacaaaggcaagattgttcaaggctaacaggaaaatgaacttgcgtgtaaagagagcaatccaaagcaatgatgatccaggagtgaggatcaagaag |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2080449 |
ccctacaaaggcaagattgttcaaggctaacaggaaaatgaacttgcgtgtaaagagagcaatccaaagcaatgatgatccaggagtgaggatcaagaag |
2080548 |
T |
|
| Q |
313 |
acttttcaacctcttgttaaagatgtaggagcgcatgaaattacaccattttgcaaacgagacatgggaaattatgttaacaaggaacgacatgcaattg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2080549 |
acttttcaacctcttgttaaagatgtaggagcgcatgaaattacaccattttgcaaacgagacatgggaaattatgttaacaaggaacgacatgcaattg |
2080648 |
T |
|
| Q |
413 |
gaaaagaaggtga |
425 |
Q |
| |
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||||||||||||| |
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| T |
2080649 |
gaaaagaaggtga |
2080661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 126 - 425
Target Start/End: Complemental strand, 18084334 - 18084035
Alignment:
| Q |
126 |
ttgtccagccaagatttgcattaagttggaagacgatggtttgtggtacattaaaagatttgaatctagccattctcacgagactacccctacaaaggca |
225 |
Q |
| |
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|||||| || |||||||| || |||||| ||| ||||| |||||||||||||| | |||||| ||| |||||||| | |||| ||||||||||||| |
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| T |
18084334 |
ttgtcctgctaagatttgtatcaagttgaaagcagatggattgtggtacattaacaaatttgagcctaatcattctcatcatactagccctacaaaggca |
18084235 |
T |
|
| Q |
226 |
agattgttcaaggctaacaggaaaatgaacttgcgtgtaaagagagcaatccaaagcaatgatgatccaggagtgaggatcaagaagacttttcaacctc |
325 |
Q |
| |
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|| ||||||||||||||| ||| ||| |||||| ||||||||| |||| |||| |||||||||| |||| ||||||||||| |||||||||||| ||| |
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| T |
18084234 |
aggctgttcaaggctaacaagaatatggacttgcatgtaaagaggacaattcaaatcaatgatgatgcaggtgtgaggatcaacaagacttttcaatctc |
18084135 |
T |
|
| Q |
326 |
ttgttaaagatgtaggagcgcatgaaattacaccattttgcaaacgagacatgggaaattatgttaacaaggaacgacatgcaattggaaaagaaggtga |
425 |
Q |
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|||||||||||| ||| | |||||||| | ||||||| || |||| || | |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
18084134 |
ttgttaaagatgcaggcgggcatgaaaatgtaccatttaatgaaagagatgtgaggaattatgttaacaaggaacgacgtgcaattggaaaagaaggtga |
18084035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0856 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: scaffold0856
Description:
Target: scaffold0856; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 126 - 425
Target Start/End: Complemental strand, 305 - 6
Alignment:
| Q |
126 |
ttgtccagccaagatttgcattaagttggaagacgatggtttgtggtacattaaaagatttgaatctagccattctcacgagactacccctacaaaggca |
225 |
Q |
| |
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|||||| || |||||||| || |||||| ||| ||||| |||||||||||||| | |||||| ||| |||||||| | |||| ||||||||||||| |
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| T |
305 |
ttgtcctgctaagatttgtatcaagttgaaagcagatggattgtggtacattaacaaatttgagcctaatcattctcatcatactagccctacaaaggca |
206 |
T |
|
| Q |
226 |
agattgttcaaggctaacaggaaaatgaacttgcgtgtaaagagagcaatccaaagcaatgatgatccaggagtgaggatcaagaagacttttcaacctc |
325 |
Q |
| |
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|| |||||||||||||||| ||| ||| |||||| ||||||||| |||| |||| |||||||||| |||| ||||||||||| |||||||||||| ||| |
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| T |
205 |
aggttgttcaaggctaacaagaatatggacttgcatgtaaagaggacaattcaaatcaatgatgatgcaggtgtgaggatcaacaagacttttcaatctc |
106 |
T |
|
| Q |
326 |
ttgttaaagatgtaggagcgcatgaaattacaccattttgcaaacgagacatgggaaattatgttaacaaggaacgacatgcaattggaaaagaaggtga |
425 |
Q |
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|||||||||||| ||| | |||||||| | ||||||| || |||| || | |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
105 |
ttgttaaagatgcaggcgggcatgaaaatgtaccatttaatgaaagagatgtgaggaattatgttaacaaggaacgacgtgcaattggaaaagaaggtga |
6 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 4e-54; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 126 - 425
Target Start/End: Complemental strand, 33360075 - 33359776
Alignment:
| Q |
126 |
ttgtccagccaagatttgcattaagttggaagacgatggtttgtggtacattaaaagatttgaatctagccattctcacgagactacccctacaaaggca |
225 |
Q |
| |
|
|||||| || |||||||| || |||||| ||| ||||| |||||||||||||| | |||||| ||| |||||||| | |||| ||||||||||||| |
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| T |
33360075 |
ttgtcctgctaagatttgtatcaagttgaaagcagatggattgtggtacattaacaaatttgagcctaatcattctcatcatactagccctacaaaggca |
33359976 |
T |
|
| Q |
226 |
agattgttcaaggctaacaggaaaatgaacttgcgtgtaaagagagcaatccaaagcaatgatgatccaggagtgaggatcaagaagacttttcaacctc |
325 |
Q |
| |
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|| ||||||||||||||| ||| ||| |||||| ||||||||| |||| |||| |||||||||| |||| ||||||||||| |||||||||||| ||| |
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| T |
33359975 |
aggctgttcaaggctaacaagaatatggacttgcatgtaaagaggacaattcaaatcaatgatgatgcaggtgtgaggatcaacaagacttttcaatctc |
33359876 |
T |
|
| Q |
326 |
ttgttaaagatgtaggagcgcatgaaattacaccattttgcaaacgagacatgggaaattatgttaacaaggaacgacatgcaattggaaaagaaggtga |
425 |
Q |
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|||||||||||| ||| | |||||||| | ||||||| || |||| || | |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33359875 |
ttgttaaagatgcaggcgggcatgaaaatgtaccatttaatgaaagagatgtgaggaattatgttaacaaggaacgacgtgcaattggaaaagaaggtga |
33359776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 126 - 425
Target Start/End: Original strand, 5743496 - 5743795
Alignment:
| Q |
126 |
ttgtccagccaagatttgcattaagttggaagacgatggtttgtggtacattaaaagatttgaatctagccattctcacgagactacccctacaaaggca |
225 |
Q |
| |
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|||||| || |||||||| || |||||| |||| ||||| |||||||||||||||| |||||| ||| |||||||| | || | ||||| ||||||| |
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| T |
5743496 |
ttgtcctgctaagatttgtatcaagttgaaagaagatggattgtggtacattaaaaaatttgagcctaatcattctcatcataccagccctagaaaggca |
5743595 |
T |
|
| Q |
226 |
agattgttcaaggctaacaggaaaatgaacttgcgtgtaaagagagcaatccaaagcaatgatgatccaggagtgaggatcaagaagacttttcaacctc |
325 |
Q |
| |
|
|| ||||| |||||| ||| ||| ||| |||||| ||||||||| |||| |||| |||||||||| |||| ||||||||||| |||| ||||||| ||| |
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|
| T |
5743596 |
aggttgttaaaggctgacaagaatatggacttgcatgtaaagaggacaattcaaatcaatgatgatgcaggtgtgaggatcaacaagaattttcaatctc |
5743695 |
T |
|
| Q |
326 |
ttgttaaagatgtaggagcgcatgaaattacaccattttgcaaacgagacatgggaaattatgttaacaaggaacgacatgcaattggaaaagaaggtga |
425 |
Q |
| |
|
|||||||||||| || | |||||||| | ||||||| || |||| || ||||||||||||| |||||||| ||||||||||||||||||||||| |
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|
| T |
5743696 |
ttgttaaagatgcagatgggcatgaaaatgtaccatttaatgaaagagatgtgagaaattatgttaaaaaggaacggcatgcaattggaaaagaaggtga |
5743795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 126 - 425
Target Start/End: Complemental strand, 37604168 - 37603869
Alignment:
| Q |
126 |
ttgtccagccaagatttgcattaagttggaagacgatggtttgtggtacattaaaagatttgaatctagccattctcacgagactacccctacaaaggca |
225 |
Q |
| |
|
|||||| || || ||||| || || ||| |||| ||||| |||||||||||| | | ||||||| || |||||||| | || | ||||| ||||||| |
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|
| T |
37604168 |
ttgtcctgctaaaatttgtatcaaattgaaagaagatggattgtggtacattcagaaatttgaacctgatcattctcatcataccagccctagaaaggca |
37604069 |
T |
|
| Q |
226 |
agattgttcaaggctaacaggaaaatgaacttgcgtgtaaagagagcaatccaaagcaatgatgatccaggagtgaggatcaagaagacttttcaacctc |
325 |
Q |
| |
|
|| ||||||||||| |||| ||||||| |||||| ||||| ||| |||| ||| |||||||||| |||| |||||| |||| |||||||||||| ||| |
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|
| T |
37604068 |
aggttgttcaaggccaacaagaaaatggacttgcatgtaaggaggacaattgaaatcaatgatgatgcaggtgtgagggtcaacaagacttttcaatctc |
37603969 |
T |
|
| Q |
326 |
ttgttaaagatgtaggagcgcatgaaattacaccattttgcaaacgagacatgggaaattatgttaacaaggaacgacatgcaattggaaaagaaggtga |
425 |
Q |
| |
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| |||||||||| ||||| | |||||| || |||||| || |||| | | || ||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
37603968 |
tggttaaagatgcaggagggtatgaaaatattccatttaatgaaagagatgtaaggaactatgttaacaaggaacgacgtgcaattggaaaagaaggtga |
37603869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 126 - 222
Target Start/End: Original strand, 38777028 - 38777124
Alignment:
| Q |
126 |
ttgtccagccaagatttgcattaagttggaagacgatggtttgtggtacattaaaagatttgaatctagccattctcacgagactacccctacaaag |
222 |
Q |
| |
|
|||||| ||||||||||| |||||||||||| | |||||||||||||||||| || |||||||||||| ||||||||| |||||| |||||||||| |
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|
| T |
38777028 |
ttgtcctgccaagatttgtattaagttggaaaaggatggtttgtggtacatttcaaaatttgaatctagacattctcacaagactagccctacaaag |
38777124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 425
Target Start/End: Original strand, 38777127 - 38777303
Alignment:
| Q |
249 |
aatgaacttgcgtgtaaagagagcaatccaaagcaatgatgatccaggagtgaggatcaagaagacttttcaacctcttgttaaagatgtaggagcgcat |
348 |
Q |
| |
|
|||| |||||| |||||| ||| ||||| ||| |||||| ||| |||||||||||| || |||||||| | | || |||| || ||| | || |||| |
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|
| T |
38777127 |
aatggacttgcatgtaaaaagaacaatcgaaatcaatgaggatgcaggagtgaggaccattaagactttccgatctattgtcaacaatgcggaagggcat |
38777226 |
T |
|
| Q |
349 |
gaaattacaccattttgcaaacgagacatgggaaattatgttaacaaggaacgacatgcaattggaaaagaaggtga |
425 |
Q |
| |
|
|||| || |||||||||| || ||||||| ||||||||||||||| |||| |||| |||||||||||||||||| |
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|
| T |
38777227 |
gaaaatataccattttgcgaaaaagacatgataaattatgttaacaacgaacaacatttaattggaaaagaaggtga |
38777303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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