View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_298 (Length: 244)
Name: NF10261A_low_298
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_298 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 38323142 - 38323361
Alignment:
| Q |
1 |
acatccccaaagcctcctcaaagcacccaatctgcgcatatccattaaccatcgaattccaaagcacaacatcccgaacaagcaattcctcaaacacctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||| |
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| T |
38323142 |
acatccccaaagcctcctcaaagcacccaatctgtgcatatccattaaccatcgaattccaaagcacaacatctctaacaggcaattcctcaaacacctc |
38323241 |
T |
|
| Q |
101 |
atgtgcatccacaaccaaccaaaatttcaaataagtagtaaccaaagcacttccaacaaaaacatccaattccaacccaaatttaaacaacaatccatga |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38323242 |
atgtgcatccacaaccaaccaaaatttcaaataagtagtaaccaaagcacttccaacaaaaacatccaattccaacccaaatttaaacaacaatccatga |
38323341 |
T |
|
| Q |
201 |
atcttcttaacctcaaaaac |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
38323342 |
atcttcttaacctcaaaaac |
38323361 |
T |
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