View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261A_low_3 (Length: 596)

Name: NF10261A_low_3
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261A_low_3
NF10261A_low_3
[»] chr7 (13 HSPs)
chr7 (265-523)||(6209721-6209970)
chr7 (414-491)||(6250937-6251014)
chr7 (215-380)||(6111110-6111273)
chr7 (414-491)||(6183391-6183465)
chr7 (37-151)||(6182369-6182482)
chr7 (346-445)||(6090234-6090324)
chr7 (296-380)||(6183294-6183378)
chr7 (37-81)||(6249182-6249226)
chr7 (414-451)||(6111286-6111323)
chr7 (35-68)||(6209497-6209530)
chr7 (35-68)||(6238810-6238843)
chr7 (345-380)||(6250889-6250924)
chr7 (530-570)||(6111411-6111451)


Alignment Details
Target: chr7 (Bit Score: 118; Significance: 6e-60; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 265 - 523
Target Start/End: Original strand, 6209721 - 6209970
Alignment:
Q  265 aagccaaatattagtaaaaacatattctcaattaccttgatcttgtgttgaataaacaactctattaatcacagcttcatgtggtggattacttgaagtg 364  Q
    |||||||||| | ||||||||| ||| ||| |||||| ||| ||||||||||||||    |||||||| | || ||||   |||||||||||||||||||    
T  6209721 aagccaaataatggtaaaaacagattatcatttacctcgatattgtgttgaataaag---tctattaaccgcaacttccgatggtggattacttgaagtg 6209817  T
Q  365 gatgccatattgttgttattctgaattccttcattaccagccacaggaggatatttggagcatcgcctaatgcctcctcctttgccattcaaacccagat 464  Q
    ||||||||||||||||      ||| |||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||    
T  6209818 gatgccatattgttgt------gaactccttctttaccagccacaggaggataattggagcatcgcctaatgcctccacctttgccattcaaccccagat 6209911  T
Q  465 gtgcttcaattcttgtagctcctccaccaaagtcttttttacaatatttgcatatccat 523  Q
    ||||||||||||||| ||||||||||| ||| |  |  |||||||||||||||||||||    
T  6209912 gtgcttcaattcttgaagctcctccactaaacttatcattacaatatttgcatatccat 6209970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 414 - 491
Target Start/End: Original strand, 6250937 - 6251014
Alignment:
Q  414 gatatttggagcatcgcctaatgcctcctcctttgccattcaaacccagatgtgcttcaattcttgtagctcctccac 491  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||    
T  6250937 gatatttggagcatggcttaatgcctcctcctttgccattcaaacccagttgtgcttcaattctagaagctcctccac 6251014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 215 - 380
Target Start/End: Original strand, 6111110 - 6111273
Alignment:
Q  215 tgctatgctagtcaattgatgacctggatatgtatagtaatggtgtttataagccaaatattagtaaaaacatatt-ctcaattaccttgatcttgtgtt 313  Q
    |||||| ||| | |||| |||| ||| ||||||||||||  | ||| |  ||||||||||||||||||||  |    |||| ||||||||||||||||||    
T  6111110 tgctatactacttaattcatgagctgaatatgtatagtatagatgtatggaagccaaatattagtaaaaaagtggaactcatttaccttgatcttgtgtt 6111209  T
Q  314 gaataaacaactctattaatcacagcttcatgtggtggattacttgaagtggatgccatattgttgt 380  Q
    ||||||||   |||||||||||||||  | | |||||||||||||||||||||||||||||||||||    
T  6111210 gaataaac---tctattaatcacagcagcttctggtggattacttgaagtggatgccatattgttgt 6111273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 414 - 491
Target Start/End: Original strand, 6183391 - 6183465
Alignment:
Q  414 gatatttggagcatcgcctaatgcctcctcctttgccattcaaacccagatgtgcttcaattcttgtagctcctccac 491  Q
    |||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||| | |||||||||||    
T  6183391 gatatttggagcatcgcctaatgcctc---ctttgccattcaaacccagatgtgcttcaattctagaagctcctccac 6183465  T

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Target: chr7; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 37 - 151
Target Start/End: Original strand, 6182369 - 6182482
Alignment:
Q  37 aatgaaagatagaaattgtcacaatttttaaacttaaaataaaaatatggatgatcacgaacatattaccagaaaatataatgtttgaagcgagttcttt 136  Q
    |||||||||||||||||||||||||||||| | || ||  ||||| |||||||||||| ||||||||| |||||| |||||| || |||| ||||||  |    
T  6182369 aatgaaagatagaaattgtcacaatttttatatttcaac-aaaaacatggatgatcaccaacatattatcagaaattataatattcgaagtgagttcaat 6182467  T
Q  137 gaagaagcatgggat 151  Q
    |||||| ||||||||    
T  6182468 gaagaaacatgggat 6182482  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 346 - 445
Target Start/End: Original strand, 6090234 - 6090324
Alignment:
Q  346 tggtggattacttgaagtggatgccatattgttgttattctgaattccttcattaccagccacaggaggatatttggagcatcgcctaatgcctcctcct 445  Q
    ||||||||||||||||||||||||||||||||||      |||| |||||||||||||||||||||| ||||   |||||||||||||||| || |||||    
T  6090234 tggtggattacttgaagtggatgccatattgttg------tgaactccttcattaccagccacaggatgata---ggagcatcgcctaatgtcttctcct 6090324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 380
Target Start/End: Original strand, 6183294 - 6183378
Alignment:
Q  296 ttaccttgatcttgtgttgaataaacaactctattaatcaca---gcttcatgtggtggattacttgaagtggatgccatattgttgt 380  Q
    |||||||||| ||||||||||||||    |||||||||||||   |||||  |||||||||||||||||||||||||||| |||||||    
T  6183294 ttaccttgatattgtgttgaataaag---tctattaatcacatgagcttctagtggtggattacttgaagtggatgccatgttgttgt 6183378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 6249182 - 6249226
Alignment:
Q  37 aatgaaagatagaaattgtcacaatttttaaacttaaaataaaaa 81  Q
    |||||||||||||||||||||||||||||||| |||||| |||||    
T  6249182 aatgaaagatagaaattgtcacaatttttaaatttaaaaaaaaaa 6249226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 414 - 451
Target Start/End: Original strand, 6111286 - 6111323
Alignment:
Q  414 gatatttggagcatcgcctaatgcctcctcctttgcca 451  Q
    |||| |||||||||||||||||||||||||||||||||    
T  6111286 gataattggagcatcgcctaatgcctcctcctttgcca 6111323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 6209497 - 6209530
Alignment:
Q  35 tcaatgaaagatagaaattgtcacaatttttaaa 68  Q
    ||||||||||||||||||||||||||||||||||    
T  6209497 tcaatgaaagatagaaattgtcacaatttttaaa 6209530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 6238810 - 6238843
Alignment:
Q  35 tcaatgaaagatagaaattgtcacaatttttaaa 68  Q
    ||||||||||||||||||||||||||||||||||    
T  6238810 tcaatgaaagatagaaattgtcacaatttttaaa 6238843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 380
Target Start/End: Original strand, 6250889 - 6250924
Alignment:
Q  345 gtggtggattacttgaagtggatgccatattgttgt 380  Q
    |||||||||||||||||||||||||||| |||||||    
T  6250889 gtggtggattacttgaagtggatgccatgttgttgt 6250924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 530 - 570
Target Start/End: Original strand, 6111411 - 6111451
Alignment:
Q  530 gtaacatgttcccagcactgttcgtgttttcctctacccat 570  Q
    |||||||||| |||||| || ||||||||||||||||||||    
T  6111411 gtaacatgtttccagcagtgctcgtgttttcctctacccat 6111451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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