View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_302 (Length: 243)
Name: NF10261A_low_302
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_302 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 44735852 - 44735616
Alignment:
| Q |
1 |
agctcctttattttgtaattatcatatacctttatctgaacgtggctacatgtcccttttataatatgataatgatgttggatcatgaagtaatattata |
100 |
Q |
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| T |
44735852 |
agctcctttattttgtaattatcatatacctttatctgaacgtggctacatgtcccttttataatatgataatgatgttggatcatgaagtaatattata |
44735753 |
T |
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| Q |
101 |
tttacaggcaaatccaagaatgacccttttcactggtagttcaagagtggcagagaagttggctgttgatttgaagggccgtgttaaattggaagatgcc |
200 |
Q |
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| T |
44735752 |
tttacaggcaaatccaagaatgacccttttcactggtagttcaagagtggcagagaagttggctgttgatttgaagggccgtgttaaattggaagatgcc |
44735653 |
T |
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| Q |
201 |
ggatttgactggaaaatattgggccctgatgtccatc |
237 |
Q |
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| T |
44735652 |
ggatttgactggaaaatattgggccctgatgtccatc |
44735616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 179
Target Start/End: Complemental strand, 17780585 - 17780444
Alignment:
| Q |
43 |
tggctacatgtcccttttataatatgataatgatgttggat-----catgaagtaatattatatttacaggcaaatccaagaatgacccttttcactggt |
137 |
Q |
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| T |
17780585 |
tggctacatgttcatattataatatggtaatgatgttggattggatcatgaattagttctatatttacaggaaaattcaagagtggaccatttcactcat |
17780486 |
T |
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| Q |
138 |
agttcaagagtggcagagaagttggctgttgatttgaagggc |
179 |
Q |
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| T |
17780485 |
agttcaagagtggcagagaagtttgctgatgatctgaagggc |
17780444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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