View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_303 (Length: 243)
Name: NF10261A_low_303
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_303 |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 15807258 - 15807425
Alignment:
| Q |
4 |
aacttgctcttgcacattgtgtgaatcaagttattttacaattgtcttatcttctgatattacttctgtagggaggaaatggttaggaacgttcagattg |
103 |
Q |
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| T |
15807258 |
aacttgctcttgcacgttgtgtgaatcatatgattttacatttatcttatcttctgatgctgttt-tgtagggaggaaatggttaggaacgttcagattg |
15807356 |
T |
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| Q |
104 |
caactgtgttgtatgaagtactgaagactttgctaactccacaaactattgaggaaaaggtgtgttttt |
172 |
Q |
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| T |
15807357 |
caactgtgttgtatgaagtactgaagactttgctaactccacaaactattgaggagaaggtgcgttttt |
15807425 |
T |
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Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 73 - 172
Target Start/End: Original strand, 45929589 - 45929688
Alignment:
| Q |
73 |
agggaggaaatggttaggaacgttcagattgcaactgtgttgtatgaagtactgaagactttgctaactccacaaactattgaggaaaaggtgtgttttt |
172 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||||| ||||| |||||||||| |||||| |||||||| ||||||||| ||||| ||||||| |
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| T |
45929589 |
agggaggaaatggttaagaatgttcagattgcaactgtgttgtttgaagcactgaagactatgctaagtccacaaaatattgaggagaaggtatgttttt |
45929688 |
T |
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