View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261A_low_305 (Length: 243)

Name: NF10261A_low_305
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261A_low_305
NF10261A_low_305
[»] chr7 (3 HSPs)
chr7 (39-175)||(3686306-3686449)
chr7 (87-161)||(3687028-3687100)
chr7 (192-222)||(3686472-3686502)
[»] chr3 (1 HSPs)
chr3 (103-162)||(41979687-41979749)
[»] chr1 (1 HSPs)
chr1 (106-158)||(4432410-4432462)


Alignment Details
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 39 - 175
Target Start/End: Original strand, 3686306 - 3686449
Alignment:
Q  39 atgaaacgatgataataataagatagacatgaaac-gatgatat------atggcataaaccatatatagtactaacatagtaagaacaatttagaaaac 131  Q
    ||||||||||||||||||||||||||||||||||| ||||  ||      | ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3686306 atgaaacgatgataataataagatagacatgaaacagatgtaatgaacaaaaggcataaaccatatataatactaacatagtaagaacaatttagaaaac 3686405  T
Q  132 aaaagcacaagatccctttcaaatgatgatacaatgaagaagaa 175  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  3686406 aaaagcacaagatccctttcaaatgatgatacaatgaaaaagaa 3686449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 3687100 - 3687028
Alignment:
Q  87 ataaaccatatatagtactaacatagtaagaacaattt-agaaaacaaaagcacaagatccctttcaaatgatgat 161  Q
    ||||||||||||||   ||||||||||||||||||||| | |||| ||||||||| ||||||||||||||||||||    
T  3687100 ataaaccatatata---ctaacatagtaagaacaattttaaaaaagaaaagcacatgatccctttcaaatgatgat 3687028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 222
Target Start/End: Original strand, 3686472 - 3686502
Alignment:
Q  192 caactttgttttacgatcttgctatccccct 222  Q
    |||||||||||||||||||||||||||||||    
T  3686472 caactttgttttacgatcttgctatccccct 3686502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 162
Target Start/End: Original strand, 41979687 - 41979749
Alignment:
Q  103 actaacatagtaagaacaatttagaaaacaaaagcacaagatccct---ttcaaatgatgata 162  Q
    |||||||||||||||||||||||  ||||||| ||||  |||||||   ||||||||||||||    
T  41979687 actaacatagtaagaacaatttaataaacaaatgcacctgatcccttcattcaaatgatgata 41979749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 4432410 - 4432462
Alignment:
Q  106 aacatagtaagaacaatttagaaaacaaaagcacaagatccctttcaaatgat 158  Q
    |||||||||||||||||||||||| | ||  |||| |||||| ||||||||||    
T  4432410 aacatagtaagaacaatttagaaagccaattcacatgatccccttcaaatgat 4432462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University