View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10261A_low_310 (Length: 242)
Name: NF10261A_low_310
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_310 |
 | |
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| [»] scaffold0144 (1 HSPs) |
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| [»] scaffold0023 (1 HSPs) |
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| [»] chr8 (3 HSPs) |
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| [»] chr6 (3 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0455 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0337 (1 HSPs) |
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| [»] scaffold0019 (2 HSPs) |
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| [»] scaffold0553 (1 HSPs) |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: scaffold0144 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 30253 - 30024
Alignment:
| Q |
13 |
acatctctagtccaacgctttaaaacatattgtccaggtattgtcttcaaaaaatgatactgcacataaccacctaagaactcaaagatcttcaaaacat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30253 |
acatctctagtccaacgctttaaaacatattgtccaggtattgtcttcaaaaaatgatactgcacataaccacctaagaactcaaagatcttcaaaacat |
30154 |
T |
|
| Q |
113 |
gtcgacataaaaagcccctgttctcaaacatacgacatgaacaactaaaacttttgcttctaatgtcaactgtgacaaccctttcatcaagtcgatcatg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30153 |
gtcgacataaaaagcccctgttctcaaacatacgacatgaacaactaaaacttttgcttctaatgtcaactgtgacaaccctttcatcaagtcgatcatg |
30054 |
T |
|
| Q |
213 |
atcttcaaaacttgggaaaaggttttcttg |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
30053 |
atcttcaaaacttgggaaaaggttttcttg |
30024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 127196 - 127425
Alignment:
| Q |
13 |
acatctctagtccaacgctttaaaacatattgtccaggtattgtcttcaaaaaatgatactgcacataaccacctaagaactcaaagatcttcaaaacat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
127196 |
acatctctagtccaacgctttaaaacatattgtccaggtattgtcttcaaaaaatgatactgcacataaccacctaagaactcaaagatcttcaaaacat |
127295 |
T |
|
| Q |
113 |
gtcgacataaaaagcccctgttctcaaacatacgacatgaacaactaaaacttttgcttctaatgtcaactgtgacaaccctttcatcaagtcgatcatg |
212 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
127296 |
gtcgacataaaaagcccctgttcttaaacatacgacatgaacaactaaaacttttgcttctaatgtcaactgtgacaaccctttcatcaagtcgatcatg |
127395 |
T |
|
| Q |
213 |
atcttcaaaacttgggaaaaggttttcttg |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
127396 |
atcttcaaaacttgggaaaaggttttcttg |
127425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 17224817 - 17224588
Alignment:
| Q |
13 |
acatctctagtccaacgctttaaaacatattgtccaggtattgtcttcaaaaaatgatactgcacataaccacctaagaactcaaagatcttcaaaacat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17224817 |
acatctctagtccaacgctttaaaacatattgtccaggtattgtcttcaaaaaatgatattgcacataaccacctaagaactcaaagatcttcaaaacat |
17224718 |
T |
|
| Q |
113 |
gtcgacataaaaagcccctgttctcaaacatacgacatgaacaactaaaacttttgcttctaatgtcaactgtgacaaccctttcatcaagtcgatcatg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17224717 |
gtcgacataaaaagcccctgttctcaaacatacgacatgaacaactaaaacttttgcttctaatgtcaactgtgacaaccctttcatcaagtcgatcatg |
17224618 |
T |
|
| Q |
213 |
atcttcaaaacttgggaaaaggttttcttg |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
17224617 |
atcttcaaaacttgggaaaaggttttcttg |
17224588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 17058299 - 17058528
Alignment:
| Q |
13 |
acatctctagtccaacgctttaaaacatattgtccaggtattgtcttcaaaaaatgatactgcacataaccacctaagaactcaaagatcttcaaaacat |
112 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
17058299 |
acatctctagtccaatgccttaaaacatattgtccagatattgtcttcaaaaaatgatattgcacataaccacctaagaactccaagatcttcaaaacat |
17058398 |
T |
|
| Q |
113 |
gtcgacataaaaagcccctgttctcaaacatacgacatgaacaactaaaacttttgcttctaatgtcaactgtgacaaccctttcatcaagtcgatcatg |
212 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17058399 |
gtcgacataaaaagcctctgttctcaaacatacgtcatgaacaactaaaacttttgcttctaatgtcaactgtgacaaccctttcatcaagtcgatcatg |
17058498 |
T |
|
| Q |
213 |
atcttcaaaacttgggaaaaggttttcttg |
242 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |
|
|
| T |
17058499 |
atcttcaaaacttgggaaaaagttttcttg |
17058528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 17589926 - 17589697
Alignment:
| Q |
13 |
acatctctagtccaacgctttaaaacatattgtccaggtattgtcttcaaaaaatgatactgcacataaccacctaagaactcaaagatcttcaaaacat |
112 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
17589926 |
acatctctagtccaaagcattaaaacatattgtccagatattgtcttcaaaaaatgatattgcacataaccacctaagaactccaagatcttcaaaacat |
17589827 |
T |
|
| Q |
113 |
gtcgacataaaaagcccctgttctcaaacatacgacatgaacaactaaaacttttgcttctaatgtcaactgtgacaaccctttcatcaagtcgatcatg |
212 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17589826 |
gtcgacataaaaagcctctgttctcaaacatacgtcatgaacaactaaaacttttgcttctaatgtcaactgtgacaaccctttcatcaagtcgatcatg |
17589727 |
T |
|
| Q |
213 |
atcttcaaaacttgggaaaaggttttcttg |
242 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |
|
|
| T |
17589726 |
atcttcaaaacttgggaaaaagttttcttg |
17589697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 28122394 - 28122165
Alignment:
| Q |
13 |
acatctctagtccaacgctttaaaacatattgtccaggtattgtcttcaaaaaatgatactgcacataaccacctaagaactcaaagatcttcaaaacat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28122394 |
acatctctagtccaacgctttaaaacatattgtccaggtattgtcttcaaaaaatgatattgcacataaccacctaagaactcaaagatcttcaaaacat |
28122295 |
T |
|
| Q |
113 |
gtcgacataaaaagcccctgttctcaaacatacgacatgaacaactaaaacttttgcttctaatgtcaactgtgacaaccctttcatcaagtcgatcatg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28122294 |
gtcgacataaaaagcccctgttctcaaacatacgacatgaacaactaaaacttttgcttctaatgtcaactgtgacaaccctttcatcaagtcgatcatg |
28122195 |
T |
|
| Q |
213 |
atcttcaaaacttgggaaaaggttttcttg |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28122194 |
atcttcaaaacttgggaaaaggttttcttg |
28122165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 22039251 - 22039480
Alignment:
| Q |
13 |
acatctctagtccaacgctttaaaacatattgtccaggtattgtcttcaaaaaatgatactgcacataaccacctaagaactcaaagatcttcaaaacat |
112 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22039251 |
acatctctagtccaacgctttaaaatatattgtccaggtattgtcttcaaaaaatgatattgcacataaccacctaagaactccaagatcttcaaaacat |
22039350 |
T |
|
| Q |
113 |
gtcgacataaaaagcccctgttctcaaacatacgacatgaacaactaaaacttttgcttctaatgtcaactgtgacaaccctttcatcaagtcgatcatg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
22039351 |
gtcgacataaaaagcccctgttctcaaacatacgatatgaacaactaaaacttttgcttctaatgttaactgtgacaactctttcatcaagtcgatcatg |
22039450 |
T |
|
| Q |
213 |
atcttcaaaacttgggaaaaggttttcttg |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
22039451 |
atcttcaaaacttgggaaaaggttttcttg |
22039480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 153 - 242
Target Start/End: Complemental strand, 34402855 - 34402766
Alignment:
| Q |
153 |
acaactaaaacttttgcttctaatgtcaactgtgacaaccctttcatcaagtcgatcatgatcttcaaaacttgggaaaaggttttcttg |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34402855 |
acaactaaaacttttgcttctaatgtcaactgtgacaaccctttcatcaagtcgatcatgatcttcaaaacttgggaaaaggttttcttg |
34402766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 44349399 - 44349628
Alignment:
| Q |
13 |
acatctctagtccaacgctttaaaacatattgtccaggtattgtcttcaaaaaatgatactgcacataaccacctaagaactcaaagatcttcaaaacat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44349399 |
acatctctagtccaacgctttaaaacatattgtccaggtattgtcttcaaaaaatgatactgcacataaccacctaagaactcaaagatcttcaaaacat |
44349498 |
T |
|
| Q |
113 |
gtcgacataaaaagcccctgttctcaaacatacgacatgaacaactaaaacttttgcttctaatgtcaactgtgacaaccctttcatcaagtcgatcatg |
212 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44349499 |
gtcgacataaaaagcccctgttcttaaacatacgacatgaacaactaaaacttttgcttctaatgtcaactgtgacaaccctttcatcaagtcgatcatg |
44349598 |
T |
|
| Q |
213 |
atcttcaaaacttgggaaaaggttttcttg |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
44349599 |
atcttcaaaacttgggaaaaggttttcttg |
44349628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 21174419 - 21174648
Alignment:
| Q |
13 |
acatctctagtccaacgctttaaaacatattgtccaggtattgtcttcaaaaaatgatactgcacataaccacctaagaactcaaagatcttcaaaacat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21174419 |
acatctctagtccaacgctttaaaacatattgtccaggtattgtcttcaaaaaatgatattgcacataaccacctaagaactcaaagatcttcaaaacat |
21174518 |
T |
|
| Q |
113 |
gtcgacataaaaagcccctgttctcaaacatacgacatgaacaactaaaacttttgcttctaatgtcaactgtgacaaccctttcatcaagtcgatcatg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21174519 |
gtcgacataaaaagcccctgttctcaaacatacgacatgaacaactaaattttttgcttctaatgtcaactgtgacaaccctttcatcaagtcgatcatg |
21174618 |
T |
|
| Q |
213 |
atcttcaaaacttgggaaaaggttttcttg |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
21174619 |
atcttcaaaacttgggaaaaggttttcttg |
21174648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 28047687 - 28047567
Alignment:
| Q |
13 |
acatctctagtccaacgctttaaaacatattgtccaggtattgtcttcaaaaaatgatactgcacataaccacctaagaactcaaagatcttcaaaacat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
28047687 |
acatctctagtccaacgctttaaaacatattgtccaagtattgtcttcaaaaaatgatattgcacataaccacctaagaactccaagatattcaaaacat |
28047588 |
T |
|
| Q |
113 |
gtcgacataaaaagcccctgt |
133 |
Q |
| |
|
|| ||||||| |||||||||| |
|
|
| T |
28047587 |
gttgacataagaagcccctgt |
28047567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 54755780 - 54755555
Alignment:
| Q |
13 |
acatctctagtccaacgctttaaaacatattgtccaggtattgtcttcaaaaaatgatactgcacataaccacctaagaactcaaagatcttcaaaacat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54755780 |
acatctctagtccaacgctttaaaacatattgtccaggtattgtcttcaaaaaatgatactgcacataaccacctaagaactcaaagatcttcaaaacat |
54755681 |
T |
|
| Q |
113 |
gtcgacataaaaagcccctgttctcaaacatacgacatgaacaactaaaacttttgcttctaatgtcaactgtgacaaccctttcatcaagtcgatcatg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
54755680 |
gtcgacataaaaagcccctgttctcaaacatacgacatgaacaactaaaacttttgcttctaatgtcaactgtgacaaccctttcatcaaatcgatcatg |
54755581 |
T |
|
| Q |
213 |
atcttcaaaacttgggaaaaggtttt |
238 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
54755580 |
atcttcaaaacttgggaaaaggtttt |
54755555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 55779755 - 55779517
Alignment:
| Q |
13 |
acatctctagtccaacgctttaaaacatattgtccaggtattgtcttcaaaaaatgatactgcacataaccacctaagaactcaaagatcttcaaaacat |
112 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||| || |
|
|
| T |
55779755 |
acatctctagtccaacgcttcaaaacatattgttcaggtattgtcttcaaaaaatgataatgtacataaccacctaagaactccaagatcttcaaaaaat |
55779656 |
T |
|
| Q |
113 |
g----tcgacataaa-----aagcccctgttctcaaacatacgacatgaacaactaaaacttttgcttctaatgtcaactgtgacaaccctttcatcaag |
203 |
Q |
| |
|
| | |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
55779655 |
gatattgcacataaccacctaagcccctgttctcaaacatacgacatgaacaactaaaacttgtgcttctaatgtcaactgtgacaaccctttcattaag |
55779556 |
T |
|
| Q |
204 |
tcgatcatgatcttcaaaacttgggaaaaggttttcttg |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55779555 |
tcgatcatgatcttcaaaacttgggaaaaggttttcttg |
55779517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 55843935 - 55843697
Alignment:
| Q |
13 |
acatctctagtccaacgctttaaaacatattgtccaggtattgtcttcaaaaaatgatactgcacataaccacctaagaactcaaagatcttcaaaacat |
112 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||| || |
|
|
| T |
55843935 |
acatctctagtccaacgcttcaaaacatattgttcaggtattgtcttcaaaaaatgataatgtacataaccacctaagaactccaagatcttcaaaaaat |
55843836 |
T |
|
| Q |
113 |
g----tcgacataaa-----aagcccctgttctcaaacatacgacatgaacaactaaaacttttgcttctaatgtcaactgtgacaaccctttcatcaag |
203 |
Q |
| |
|
| | |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
55843835 |
gatattgcacataaccacctaagcccctgttctcaaacatacgacatgaacaactaaaacttgtgcttctaatgtcaactgtgacaaccctttcattaag |
55843736 |
T |
|
| Q |
204 |
tcgatcatgatcttcaaaacttgggaaaaggttttcttg |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55843735 |
tcgatcatgatcttcaaaacttgggaaaaggttttcttg |
55843697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 11974207 - 11973978
Alignment:
| Q |
13 |
acatctctagtccaacgctttaaaacatattgtccaggtattgtcttcaaaaaatgatactgcacataaccacctaagaactcaaagatcttcaaaacat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11974207 |
acatctctagtccaacgctttaaaacatattgtctaggtattgtcttcaaaaaatgatattgcacataaccacctaagaactcaaagatcttcaaaacat |
11974108 |
T |
|
| Q |
113 |
gtcgacataaaaagcccctgttctcaaacatacgacatgaacaactaaaacttttgcttctaatgtcaactgtgacaaccctttcatcaagtcgatcatg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11974107 |
gtcgacataaaaagcccctgttctcaaacatacgacatgaacaactaaaacttttgcttctaatgtcaactgtgacaaccctttcatcaagtcgatcatg |
11974008 |
T |
|
| Q |
213 |
atcttcaaaacttgggaaaaggttttcttg |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
11974007 |
atcttcaaaacttgggaaaaggttttcttg |
11973978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 9183422 - 9183651
Alignment:
| Q |
13 |
acatctctagtccaacgctttaaaacatattgtccaggtattgtcttcaaaaaatgatactgcacataaccacctaagaactcaaagatcttcaaaacat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||| |||||| |||||||||||||||| || || || ||||||| |
|
|
| T |
9183422 |
acatctctagtccaacgctttaaaacatattgtccaagtatcgtcttcaaacaatgatattgcacagaaccacctaagaactccaaaattttgaaaacat |
9183521 |
T |
|
| Q |
113 |
gtcgacataaaaagcccctgttctcaaacatacgacatgaacaactaaaacttttgcttctaatgtcaactgtgacaaccctttcatcaagtcgatcatg |
212 |
Q |
| |
|
|||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9183522 |
gtcgacataagaagcccatgttcttaaacatacgacatgaacaactaaaacttttgcttctaatttcaactgtgacaaccctttcatcaagtcgatcatg |
9183621 |
T |
|
| Q |
213 |
atcttcaaaacttgggaaaaggttttcttg |
242 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
9183622 |
atcttcaaaacttgggaaaaggtttccttg |
9183651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 4719636 - 4719865
Alignment:
| Q |
13 |
acatctctagtccaacgctttaaaacatattgtccaggtattgtcttcaaaaaatgatactgcacataaccacctaagaactcaaagatcttcaaaacat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4719636 |
acatctctagtccaacgctttaaaacatattgtccaggtattgtcttcaaaaaatgatactgcacataaccacctaagaactcaaagatcttcaaaacat |
4719735 |
T |
|
| Q |
113 |
gtcgacataaaaagcccctgttctcaaacatacgacatgaacaactaaaacttttgcttctaatgtcaactgtgacaaccctttcatcaagtcgatcatg |
212 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4719736 |
gtcgacataaaaagcccctgttcttaaacatacgtcatgaacaactaaaacttttgcttctaatgtcaactgtgacaaccctttcatcaagtcgatcatg |
4719835 |
T |
|
| Q |
213 |
atcttcaaaacttgggaaaaggttttcttg |
242 |
Q |
| |
|
||||||||||||| |||||||||||||||| |
|
|
| T |
4719836 |
atcttcaaaactttggaaaaggttttcttg |
4719865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 10563269 - 10563040
Alignment:
| Q |
13 |
acatctctagtccaacgctttaaaacatattgtccaggtattgtcttcaaaaaatgatactgcacataaccacctaagaactcaaagatcttcaaaacat |
112 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
10563269 |
acatctctagtccaacactttaaaacatattgtccaagtattgtcttcaaaaaatgatattgcatataaccacctaagaactccaagatcttcaaaacat |
10563170 |
T |
|
| Q |
113 |
gtcgacataaaaagcccctgttctcaaacatacgacatgaacaactaaaacttttgcttctaatgtcaactgtgacaaccctttcatcaagtcgatcatg |
212 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10563169 |
gtcgacataagaagcccctgttctcaaacatacgacatgaacaactaaaaattttgcttctaatgtcaactgtgacaaccctttcatcaagtcgatcatg |
10563070 |
T |
|
| Q |
213 |
atcttcaaaacttgggaaaaggttttcttg |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10563069 |
atcttcaaaacttgggaaaaggttttcttg |
10563040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0455 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: scaffold0455
Description:
Target: scaffold0455; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 480 - 251
Alignment:
| Q |
13 |
acatctctagtccaacgctttaaaacatattgtccaggtattgtcttcaaaaaatgatactgcacataaccacctaagaactcaaagatcttcaaaacat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
480 |
acatctctagtccaacgctttaaaacatattgtccaggtattgtcttcaaaaaatgatattgcacataaccacctaagaactccaatatcttcaaaacat |
381 |
T |
|
| Q |
113 |
gtcgacataaaaagcccctgttctcaaacatacgacatgaacaactaaaacttttgcttctaatgtcaactgtgacaaccctttcatcaagtcgatcatg |
212 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
380 |
gtcgacataagaagcccatgttctcaaacatacgacatgaacaactaaaacttttgcttctaatgtcaactgtgacaaccctttcatcaagtcgatcatg |
281 |
T |
|
| Q |
213 |
atcttcaaaacttgggaaaaggttttcttg |
242 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |
|
|
| T |
280 |
atcttcaaaacttgtgaaaaggttttcttg |
251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 19845250 - 19845021
Alignment:
| Q |
13 |
acatctctagtccaacgctttaaaacatattgtccaggtattgtcttcaaaaaatgatactgcacataaccacctaagaactcaaagatcttcaaaacat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19845250 |
acatctctagtccaacgctttaaaacatattgtccagatattgtcttcaaaaaatgatattgcacataaccacctaagaactccaagatcttcaaaacat |
19845151 |
T |
|
| Q |
113 |
gtcgacataaaaagcccctgttctcaaacatacgacatgaacaactaaaacttttgcttctaatgtcaactgtgacaaccctttcatcaagtcgatcatg |
212 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19845150 |
gtcgacataagaagcccctgttctcaaacatacgacatgaacaaccaaaacttttgcttataatgtcaactgtgacaaccctttcatcaagtcgatcatg |
19845051 |
T |
|
| Q |
213 |
atcttcaaaacttgggaaaaggttttcttg |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
19845050 |
atcttcaaaacttgggaaaaggttttcttg |
19845021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0337 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: scaffold0337
Description:
Target: scaffold0337; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 13362 - 13132
Alignment:
| Q |
13 |
acatctctagtccaacgctttaaaacatattgtccaggtattgtcttcaaaaaatgatactgcacataaccacctaagaactcaaagatcttcaaaacat |
112 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
13362 |
acatctctagtccaatgctttaaaacatattgtcctggtattgtcttcaaaaaatgatattacacataaccacctaagaactccaagatcttaaaaacat |
13263 |
T |
|
| Q |
113 |
gtcgacataaaaagcccct-gttctcaaacatacgacatgaacaactaaaacttttgcttctaatgtcaactgtgacaaccctttcatcaagtcgatcat |
211 |
Q |
| |
|
|||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
13262 |
gtcgacataagaagccccttgttcttaaacatacgacatgaacaactaaaacttttgcttctaatgtcaactgtgacaaccctttcatcaagtcgaccat |
13163 |
T |
|
| Q |
212 |
gatcttcaaaacttgggaaaaggttttcttg |
242 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |
|
|
| T |
13162 |
gatcttcaaaacttgggaaaatgttttcttg |
13132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 73 - 242
Target Start/End: Complemental strand, 167757 - 167588
Alignment:
| Q |
73 |
tgcacataaccacctaagaactcaaagatcttcaaaacatgtcgacataaaaagcccctgttctcaaacatacgacatgaacaactaaaacttttgcttc |
172 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
167757 |
tgcacataaccacctaagaactccaagatcttcaaaacatttcgacataagaagcccctgttctcaaacatacgacatgaacaactaaaacttttgcttc |
167658 |
T |
|
| Q |
173 |
taatgtcaactgtgacaaccctttcatcaagtcgatcatgatcttcaaaacttgggaaaaggttttcttg |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
167657 |
taatgtcaactgtgacaaccctttcatcaagtcgatcatgatcttcaaaacttgggaaaaggttttcttg |
167588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 44
Target Start/End: Complemental strand, 167787 - 167756
Alignment:
| Q |
13 |
acatctctagtccaacgctttaaaacatattg |
44 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
167787 |
acatctctagtccaacgctttaaaacatattg |
167756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0553 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0553
Description:
Target: scaffold0553; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 76 - 241
Target Start/End: Complemental strand, 5818 - 5653
Alignment:
| Q |
76 |
acataaccacctaagaactcaaagatcttcaaaacatgtcgacataaaaagcccctgttctcaaacatacgacatgaacaactaaaacttttgcttctaa |
175 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||| ||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5818 |
acataaccacctaagaactccaagatcttgaaaacatttcgacataagaagcccatgttcttaaacatacgacatgaacaactaaaacttttgcttctaa |
5719 |
T |
|
| Q |
176 |
tgtcaactgtgacaaccctttcatcaagtcgatcatgatcttcaaaacttgggaaaaggttttctt |
241 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5718 |
tttcaactgtgacaaccctttcatcaagtcgatcatgatcttcaaaacttgggaaaaggttttctt |
5653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 17101 - 17157
Alignment:
| Q |
8 |
gatggacatctctagtccaacgctttaaaacatattgtccaggtattgtcttcaaaa |
64 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
17101 |
gatgcacatctctagtccaactctttaaaacatattgtccaggtattgtcttcaaaa |
17157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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