View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261A_low_318 (Length: 241)

Name: NF10261A_low_318
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261A_low_318
NF10261A_low_318
[»] chr7 (4 HSPs)
chr7 (7-219)||(23983290-23983502)
chr7 (38-141)||(9107308-9107410)
chr7 (3-93)||(36449287-36449376)
chr7 (3-111)||(9427899-9428007)
[»] chr2 (10 HSPs)
chr2 (46-219)||(16952207-16952380)
chr2 (46-219)||(17022872-17023045)
chr2 (46-219)||(17060178-17060351)
chr2 (46-237)||(10173403-10173593)
chr2 (35-150)||(20572226-20572340)
chr2 (125-211)||(34230292-34230378)
chr2 (7-110)||(27740153-27740255)
chr2 (3-82)||(27879932-27880011)
chr2 (6-86)||(12343037-12343116)
chr2 (3-65)||(13699083-13699144)
[»] chr1 (8 HSPs)
chr1 (3-219)||(16577344-16577561)
chr1 (3-82)||(38548856-38548934)
chr1 (5-208)||(41126271-41126462)
chr1 (6-92)||(16148987-16149073)
chr1 (3-82)||(38544535-38544613)
chr1 (125-211)||(16147649-16147735)
chr1 (58-86)||(24659146-24659174)
chr1 (3-86)||(32882584-32882668)
[»] chr5 (3 HSPs)
chr5 (35-228)||(17853882-17854073)
chr5 (6-158)||(26045746-26045901)
chr5 (37-85)||(39024259-39024306)
[»] chr4 (6 HSPs)
chr4 (37-141)||(12296322-12296426)
chr4 (70-171)||(19673231-19673332)
chr4 (35-93)||(48098546-48098605)
chr4 (72-214)||(19815071-19815213)
chr4 (6-86)||(38637016-38637095)
chr4 (37-82)||(46487477-46487522)
[»] chr6 (3 HSPs)
chr6 (46-219)||(32935165-32935337)
chr6 (128-211)||(20701710-20701793)
chr6 (37-145)||(21266263-21266369)
[»] chr8 (2 HSPs)
chr8 (3-127)||(17720503-17720626)
chr8 (6-86)||(10248349-10248430)
[»] scaffold1613 (1 HSPs)
scaffold1613 (3-82)||(814-892)
[»] chr3 (6 HSPs)
chr3 (68-211)||(39021122-39021267)
chr3 (6-85)||(823219-823297)
chr3 (35-93)||(14879648-14879707)
chr3 (61-106)||(23328188-23328233)
chr3 (3-110)||(27399140-27399246)
chr3 (6-85)||(33143733-33143813)


Alignment Details
Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 7 - 219
Target Start/End: Complemental strand, 23983502 - 23983290
Alignment:
Q  7 caccacctaaaacaaacttattcacgtcaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaat 106  Q
    |||||||||||||| ||| |||||||  ||| ||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||    
T  23983502 caccacctaaaacagactcattcacgaaaacaaccactgaaaaacgatatacataactacccatcatcactactcaccccaaaagaagaccgctctaaat 23983403  T
Q  107 gaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccccctctcaacctccgatacaccga 206  Q
    |||||||||| ||||||||| ||||| ||||||| ||||||||| ||||||||||||| |||||||  || ||||| |||||||||||||||||||||||    
T  23983402 gaaattctcggtcctcatcatcaaagctgaaccagatccgaaaagctcatattcgaaagatcattcaactgtcaccacctctcaacctccgatacaccga 23983303  T
Q  207 aagaacacaaaaa 219  Q
    |||||||||||||    
T  23983302 aagaacacaaaaa 23983290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 141
Target Start/End: Complemental strand, 9107410 - 9107308
Alignment:
Q  38 gaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaa 137  Q
    ||||| || |||||||||| ||||||||||||||| ||||||||| ||| ||| ||  || ||||||||||||  | | ||||||||||||||||||||     
T  9107410 gaccattggaaaacgatatccataaccacccatcgccactactcatcccaaaataactcccctctaaatgaaacac-ccatcctcatcaccaaagttgag 9107312  T
Q  138 ccac 141  Q
    ||||    
T  9107311 ccac 9107308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 36449376 - 36449287
Alignment:
Q  3 acatcaccacctaaaacaaacttattcacgtcaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaa 93  Q
    |||||||||||||||| | |||  ||||||  ||| ||| |||||||||||||| ||||||||| ||||||||||||||||| | ||||||    
T  36449376 acatcaccacctaaaatagactacttcacga-aacaaccgctgaaaaacgatatccataaccactcatcgtcactactcaccacaaaagaa 36449287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 9427899 - 9428007
Alignment:
Q  3 acatcaccacctaaaacaaacttattcacgtcaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctct 102  Q
    ||||||| |||||||||||| |  ||||||   || |||||| ||||| ||||| ||||||||||| ||||||||||||| ||| ||| |  | | ||||    
T  9427899 acatcactacctaaaacaaattctttcacgaagacaaccactaaaaaatgatatccataaccacccgtcgtcactactcatccctaaatagcatccctct 9427998  T
Q  103 aaatgaaat 111  Q
    |||||||||    
T  9427999 aaatgaaat 9428007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 46 - 219
Target Start/End: Original strand, 16952207 - 16952380
Alignment:
Q  46 aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatcc 145  Q
    ||||| ||||| ||| ||||| ||||||||||||||||||| |||||| ||| |||||||||||| || |  |||||| |||||||||||| ||||||||    
T  16952207 aaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatcc 16952306  T
Q  146 gaaaacctcatattcgaaatatcattccgctatcaccccctctcaacctccgatacaccgaaagaacacaaaaa 219  Q
    ||||| ||| ||| ||||| ||| ||  |||  |||| |||||||||||||||| |||||||||||||| ||||    
T  16952307 gaaaagctcctatccgaaagatcgtttagcttccaccacctctcaacctccgatccaccgaaagaacaccaaaa 16952380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 46 - 219
Target Start/End: Original strand, 17022872 - 17023045
Alignment:
Q  46 aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatcc 145  Q
    ||||| ||||| ||| ||||| ||||||||||||||||||| |||||| ||| |||||||||||| || |  |||||| |||||||||||| ||||||||    
T  17022872 aaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatcc 17022971  T
Q  146 gaaaacctcatattcgaaatatcattccgctatcaccccctctcaacctccgatacaccgaaagaacacaaaaa 219  Q
    ||||| ||| ||| ||||| ||| ||  |||  |||| |||||||||||||||| |||||||||||||| ||||    
T  17022972 gaaaagctcctatccgaaagatcgtttagcttccaccacctctcaacctccgatccaccgaaagaacaccaaaa 17023045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 46 - 219
Target Start/End: Original strand, 17060178 - 17060351
Alignment:
Q  46 aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatcc 145  Q
    ||||| ||||| ||| ||||| ||||||||||||||||||| |||||| ||| |||||||||||| || |  |||||| |||||||||||| ||||||||    
T  17060178 aaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatcc 17060277  T
Q  146 gaaaacctcatattcgaaatatcattccgctatcaccccctctcaacctccgatacaccgaaagaacacaaaaa 219  Q
    ||||| ||| ||| ||||| ||| ||  |||  |||| |||||||||||||||| |||||||||||||| ||||    
T  17060278 gaaaagctcctatccgaaagatcgtttagcttccaccacctctcaacctccgatccaccgaaagaacaccaaaa 17060351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 46 - 237
Target Start/End: Original strand, 10173403 - 10173593
Alignment:
Q  46 aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatcc 145  Q
    ||||||||||||||  ||||| ||||||||||||||||||| |||||| ||  ||| |||| ||| ||||  |||||| |||||||| ||| ||||||||    
T  10173403 aaaaacgatatacaacaccactcatcgtcactactcacccc-aaagaatactcctcaaaattaaactctcagtcctcaacaccaaagctgagccacatcc 10173501  T
Q  146 gaaaacctcatattcgaaatatcattccgctatcaccccctctcaacctccgatacaccgaaagaacacaaaaataaccccaacaccaaact 237  Q
    ||||| ||||||||| ||| |||||||  ||  |||| |||||| ||||||||| |||||||||||||| || | || ||||| ||||||||    
T  10173502 gaaaagctcatattcaaaagatcattcaacttccaccacctctcgacctccgattcaccgaaagaacaccaacaaaagcccaaaaccaaact 10173593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 35 - 150
Target Start/End: Complemental strand, 20572340 - 20572226
Alignment:
Q  35 aacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagtt 134  Q
    |||||||||||||||||||||| |||||||||| |||| ||||||||||| | |||||| ||| |||||||||||| ||||  |||||||||| |||| |    
T  20572340 aacgaccactgaaaaacgatatccataaccacc-atcgccactactcacctcaaaagaacacccctctaaatgaaactctcattcctcatcactaaagct 20572242  T
Q  135 gaaccacatccgaaaa 150  Q
     ||||| |||||||||    
T  20572241 aaaccatatccgaaaa 20572226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 211
Target Start/End: Complemental strand, 34230378 - 34230292
Alignment:
Q  125 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccccctctcaacctccgatacaccgaaagaa 211  Q
    |||||||||||| ||||||| ||||| ||| |||| |||| ||||||| |||  |||| |||||||||||||||| |||||||||||    
T  34230378 caccaaagttgagccacatctgaaaagctcttatttgaaagatcattcagcttccaccacctctcaacctccgatccaccgaaagaa 34230292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 27740255 - 27740153
Alignment:
Q  7 caccacctaaaacaaacttattcacgtcaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaat 106  Q
    |||||||||| |||||||  ||||||  ||| ||||||||| |||||||| ||||||||| | ||| ||||||||| |||  || || ||| ||||||||    
T  27740255 caccacctaatacaaactccttcacga-aactaccactgaagaacgatattcataaccactcgtcgccactactcatcccagaataacacccctctaaat 27740157  T
Q  107 gaaa 110  Q
    ||||    
T  27740156 gaaa 27740153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 27879932 - 27880011
Alignment:
Q  3 acatcaccacctaaaacaaacttattcacgtcaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 82  Q
    |||||||||||||||||| |||  |||| |  ||||||| ||||||||||| || ||||||||| ||||  |||||||||    
T  27879932 acatcaccacctaaaacagactccttcaggaaaacgacctctgaaaaacgaaatccataaccactcatcaccactactca 27880011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 12343116 - 12343037
Alignment:
Q  6 tcaccacctaaaacaaacttattcacgtcaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 86  Q
    ||||||||||||||| |||  ||||||  ||||||| ||| ||||||||||| ||  ||||| |||||||||||||||||||    
T  12343116 tcaccacctaaaacagactccttcacgaaaacgacctctgtaaaaacgatatcca--accactcatcgtcactactcacccc 12343037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 13699083 - 13699144
Alignment:
Q  3 acatcaccacctaaaacaaacttattcacgtcaacgaccactgaaaaacgatatacataacca 65  Q
    |||||||||||||||||| |||  || |||  |||||||||||||||||| ||||||||||||    
T  13699083 acatcaccacctaaaacacactcttttacga-aacgaccactgaaaaacggtatacataacca 13699144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 219
Target Start/End: Complemental strand, 16577561 - 16577344
Alignment:
Q  3 acatcaccacctaaaacaaacttattcacgtcaacgaccactgaaaaac-gatatacataaccacccatcgtcactactcaccccgaaagaagaccgctc 101  Q
    |||||| ||||||||||| |||  ||||||  |||||||||| |||||  ||||| ||||||||  ||||||| |||||||| || |||||| ||| |||    
T  16577561 acatcatcacctaaaacagactctttcacgaaaacgaccactcaaaaaatgatatccataaccattcatcgtccctactcactccaaaagaacacccctc 16577462  T
Q  102 taaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccccctctcaacctccgatac 201  Q
    |||| |||| | ||  ||  ||||||||||||||| ||||||||||||| ||| ||||| ||| ||||||| |||  |||| ||||||||||||| ||      
T  16577461 taaaagaaactttcagtcaccatcaccaaagttgagccacatccgaaaagctcctattccaaagatcattcagcttccaccacctctcaacctccaatct 16577362  T
Q  202 accgaaagaacacaaaaa 219  Q
    ||||||||||| ||||||    
T  16577361 accgaaagaacgcaaaaa 16577344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 38548856 - 38548934
Alignment:
Q  3 acatcaccacctaaaacaaacttattcacgtcaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 82  Q
    |||||||||||||||||| |||  ||||||  ||||| |||||||||||||||| |||||||||||||||||||||||||    
T  38548856 acatcaccacctaaaacagactctttcacga-aacgatcactgaaaaacgatattcataaccacccatcgtcactactca 38548934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 208
Target Start/End: Original strand, 41126271 - 41126462
Alignment:
Q  5 atcaccacctaaaacaaacttattcacgtcaacga-ccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctcta 103  Q
    |||||||||||||||| ||  |||||||  ||| | |||||| |||||||||| ||| ||||||||||||||||||||||||             |||||    
T  41126271 atcaccacctaaaacagacgcattcacgaaaacaaaccactgtaaaacgatatccatcaccacccatcgtcactactcaccc-------------ctcta 41126357  T
Q  104 aatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccccctctcaacctccgatacac 203  Q
    ||||||| ||||  ||||||||||||||||||| ||||||| ||||| ||| ||| | ||| ||| ||| |||  || | ||||||||||||| || |||    
T  41126358 aatgaaactctcagtcctcatcaccaaagttgatccacatctgaaaagctcctatccaaaagatcgttcagcttccagcacctctcaacctccaatccac 41126457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 16149073 - 16148987
Alignment:
Q  6 tcaccacctaaaacaaacttattcacgtcaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaaga 92  Q
    ||||||||||||||| ||   |||| || |||||| ||||||||||||||| || || ||||||||||||||||||||||| |||||    
T  16149073 tcaccacctaaaacagacaccttcatgtaaacgactactgaaaaacgatatccaaaagcacccatcgtcactactcacccccaaaga 16148987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 38544535 - 38544613
Alignment:
Q  3 acatcaccacctaaaacaaacttattcacgtcaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 82  Q
    |||||||||||||||||| |||  ||||||  || || ||||| |||||||||| ||||||||| |||||||||||||||    
T  38544535 acatcaccacctaaaacagactctttcacgg-aatgatcactggaaaacgatatccataaccactcatcgtcactactca 38544613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 211
Target Start/End: Complemental strand, 16147735 - 16147649
Alignment:
Q  125 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccccctctcaacctccgatacaccgaaagaa 211  Q
    |||||||| ||| ||||||||||||| |||||||  |||| |||||||  || ||||| |||||| |||||||||  ||||||||||    
T  16147735 caccaaagctgagccacatccgaaaagctcatatctgaaagatcattcaactttcaccacctctccacctccgatctaccgaaagaa 16147649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 86
Target Start/End: Complemental strand, 24659174 - 24659146
Alignment:
Q  58 cataaccacccatcgtcactactcacccc 86  Q
    |||||||||||||||||||||||||||||    
T  24659174 cataaccacccatcgtcactactcacccc 24659146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 32882668 - 32882584
Alignment:
Q  3 acatcaccacctaaaacaaacttattcacgtcaacgaccactgaaaa-acgatatacataaccacccatcgtcactactcacccc 86  Q
    |||||||| ||||||||  |||  ||||||  ||||| ||||| ||| ||||||| ||  |||||||||||||||||||||||||    
T  32882668 acatcaccgcctaaaactgactccttcacgaaaacgagcactgtaaacacgatatccaacaccacccatcgtcactactcacccc 32882584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 35 - 228
Target Start/End: Original strand, 17853882 - 17854073
Alignment:
Q  35 aacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagtt 134  Q
    ||||| |||||||||||||||| ||||||||||||||  ||||||||||||| |||| ||||  ||||||||||||  | | ||||||||||||| || |    
T  17853882 aacgatcactgaaaaacgatatccataaccacccatcaccactactcaccccaaaagtagacacctctaaatgaaacac-caatcctcatcaccatagct 17853980  T
Q  135 gaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccccctctcaacctccgatacaccgaaagaacacaaaaataaccccaa 228  Q
    || |||||||||||||  |||||||| ||| |||||||  ||  |||| ||||||||| || | | |||||||||||||  ||||||| |||||    
T  17853981 gagccacatccgaaaa-gtcatattctaaagatcattcaacttccaccacctctcaacttcaggtccaccgaaagaacattaaaataagcccaa 17854073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 158
Target Start/End: Original strand, 26045746 - 26045901
Alignment:
Q  6 tcaccacctaaaacaaacttattcacgtcaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccga--aagaagaccgctct 102  Q
    ||||||||||||||| |||| |||| |  || |||||| | |||||||| || ||  ||| ||||||||||||||||||||| |  || || ||| |||     
T  26045746 tcaccacctaaaacagacttcttcatgaaaatgaccacggtaaaaacgaaatccaacacctcccatcgtcactactcaccccaaagaaaaacacccctca 26045845  T
Q  103 aaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatat 158  Q
    |||| ||| |||| ||||| | ||||||||||||  ||| |||||||| |||||||    
T  26045846 aaattaaactctcaatcctaaacaccaaagttgagtcacctccgaaaagctcatat 26045901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 39024259 - 39024306
Alignment:
Q  37 cgaccactgaaaaacgatatacataaccacccatcgtcactactcaccc 85  Q
    |||||| ||||||||||||| ||||| ||| ||||||||||||||||||    
T  39024259 cgaccattgaaaaacgatatccataa-cactcatcgtcactactcaccc 39024306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 141
Target Start/End: Complemental strand, 12296426 - 12296322
Alignment:
Q  37 cgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttga 136  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||| ||| ||| || ||| ||||||||||||  |||  ||||||||||| |||||||    
T  12296426 cgaccactgaaaaacgatatccataaccacccatcgccactactcatcccaaaataacacccctctaaatgaaacactccgtcctcatcacctaagttga 12296327  T
Q  137 accac 141  Q
     ||||    
T  12296326 gccac 12296322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 171
Target Start/End: Complemental strand, 19673332 - 19673231
Alignment:
Q  70 tcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatca 169  Q
    ||||||||||||||||| |||||| ||  ||| |||| ||| ||||  |||||| |||||||||| | |||||||||||||  |||||| | ||||||||    
T  19673332 tcgtcactactcacccccaaagaacactcctcaaaattaaactctcagtcctcaacaccaaagtttagccacatccgaaaagttcatatccaaaatatca 19673233  T
Q  170 tt 171  Q
    ||    
T  19673232 tt 19673231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 48098605 - 48098546
Alignment:
Q  35 aacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaa 93  Q
    ||||||||||| ||||||||||| ||| || |||| ||||||||||||||||| ||||||    
T  48098605 aacgaccactgtaaaaacgatatccatcacaacccgtcgtcactactcacccccaaagaa 48098546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 214
Target Start/End: Original strand, 19815071 - 19815213
Alignment:
Q  72 gtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcatt 171  Q
    ||||||||||||||| |||||| ||  ||| | || ||| ||||  |||||| |||||||||| | ||||||| |||||  || ||| ||||| ||||||    
T  19815071 gtcactactcacccccaaagaacacttctcaagattaaactctcagtcctcaacaccaaagtttagccacatcggaaaagttcctatccgaaagatcatt 19815170  T
Q  172 ccgctatcaccccctctcaacctccgatacaccgaaagaacac 214  Q
      |||  ||||  ||||| ||||||| | ||||||||||||||    
T  19815171 tagcttccaccatctctcgacctccggtccaccgaaagaacac 19815213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 38637016 - 38637095
Alignment:
Q  6 tcaccacctaaaacaaacttattcacgtcaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 86  Q
    |||||||||||||||||||  ||||||  ||| ||| ||| ||||| ||||| ||  |||||||||||||||||||||||||    
T  38637016 tcaccacctaaaacaaactccttcacgaaaacaaccgctgtaaaaatgatatcca--accacccatcgtcactactcacccc 38637095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 46487522 - 46487477
Alignment:
Q  37 cgaccactgaaaaacgatatacataaccacccatcgtcactactca 82  Q
    |||||||||||||||||||| |||||||||  |||| |||||||||    
T  46487522 cgaccactgaaaaacgatattcataaccacatatcgccactactca 46487477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 46 - 219
Target Start/End: Original strand, 32935165 - 32935337
Alignment:
Q  46 aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatcc 145  Q
    |||||||||||||||||||||||||| |||||||| ||||| ||| || | | |||||||||||| || |  | ||||||||||||| |||   ||||||    
T  32935165 aaaaacgatatacataaccacccatcatcactactgacccc-aaaaaacatccctctaaatgaaactcacagtgctcatcaccaaagctgagttacatcc 32935263  T
Q  146 gaaaacctcatattcgaaatatcattccgctatcaccccctctcaacctccgatacaccgaaagaacacaaaaa 219  Q
    ||||| ||||| ||||||| ||||| | |||  |||| |||| ||||||  ||  |||||||||||||| ||||    
T  32935264 gaaaaactcatgttcgaaagatcatgcagcttccaccacctcccaacctttgaaccaccgaaagaacactaaaa 32935337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 211
Target Start/End: Original strand, 20701710 - 20701793
Alignment:
Q  128 caaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccccctctcaacctccgatacaccgaaagaa 211  Q
    ||||||||| |||||| |||||| ||| ||| ||||| ||||||| |||  |||  |||||| ||||||||| |||||||||||    
T  20701710 caaagttgagccacattcgaaaagctcctatccgaaagatcattcagcttccactacctctcgacctccgatccaccgaaagaa 20701793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 145
Target Start/End: Complemental strand, 21266369 - 21266263
Alignment:
Q  37 cgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttga 136  Q
    ||||||||||||||||| || || ||| ||| |||||||||||||||||| || ||| |||| | |||| ||||  ||| ||||||| |||||||  |||    
T  21266369 cgaccactgaaaaacgacatccagaacaacc-atcgtcactactcaccccaaaggaacaccgttgtaaaagaaa-actcaatcctcaacaccaaaactga 21266272  T
Q  137 accacatcc 145  Q
     ||||||||    
T  21266271 gccacatcc 21266263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 17720503 - 17720626
Alignment:
Q  3 acatcaccacctaaaacaaacttattcacgtcaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctct 102  Q
    ||||||| ||||||||||||||  |||||   || |||| || ||||| |||||||||||||||  |||||||||||||||||| |||  | ||| ||||    
T  17720503 acatcactacctaaaacaaactccttcaccaaaa-gacctctaaaaaaagatatacataaccacatatcgtcactactcaccccaaaaataaacccctct 17720601  T
Q  103 aaatgaaattctcgatcctcatcac 127  Q
    ||||||||  |||  ||||||||||    
T  17720602 aaatgaaacactccgtcctcatcac 17720626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 10248349 - 10248430
Alignment:
Q  6 tcaccacctaaaacaaacttattcacgtcaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 86  Q
    |||||||||||||||||||  ||||||  ||||||||||| |||||||| || |   | |||||||||||||||||||||||    
T  10248349 tcaccacctaaaacaaactccttcacgaaaacgaccactgtaaaaacgacatcccacaacacccatcgtcactactcacccc 10248430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 814 - 892
Alignment:
Q  3 acatcaccacctaaaacaaacttattcacgtcaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 82  Q
    |||||||||||||||||| |||  ||||||  || || ||||| |||||||||| ||||||||| |||||||||||||||    
T  814 acatcaccacctaaaacagactctttcacgg-aatgatcactggaaaacgatatccataaccactcatcgtcactactca 892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 211
Target Start/End: Original strand, 39021122 - 39021267
Alignment:
Q  68 catcgtcactactcaccccgaaagaagaccgc-tctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcg-aaat 165  Q
    |||||||||||||||| || ||||||   ||| || |||||||| ||||  |||||| |||||||| | | ||||||||||||| ||||||| || |||     
T  39021122 catcgtcactactcacacccaaagaaacacgcgtcaaaatgaaactctcagtcctcaacaccaaagctaagccacatccgaaaaactcatatccgaaaag 39021221  T
Q  166 atcattccgctatcaccccctctcaacctccgatacaccgaaagaa 211  Q
    |||| || |||| ||||  ||||| ||||||||| |||| ||||||    
T  39021222 atcaatcagctaccaccatctctcgacctccgatccaccaaaagaa 39021267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 823219 - 823297
Alignment:
Q  6 tcaccacctaaaacaaacttattcacgtcaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccc 85  Q
    |||||||||||||||||||   ||||   ||| |||||||||||||||||| ||||||||||| ||| | ||||||||||    
T  823219 tcaccacctaaaacaaactccatcacaa-aacaaccactgaaaaacgatatccataaccacccttcgcctctactcaccc 823297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 14879707 - 14879648
Alignment:
Q  35 aacgaccactgaaaaa-cgatatacataaccacccatcgtcactactcaccccgaaagaa 93  Q
    |||||||||||||||| |||||| ||  ||||| ||||||||||| ||||||||||||||    
T  14879707 aacgaccactgaaaaaacgatatccaacaccacacatcgtcactattcaccccgaaagaa 14879648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 23328188 - 23328233
Alignment:
Q  61 aaccacccatcgtcactactcaccccgaaagaagaccgctctaaat 106  Q
    |||||||||||||||||||||||||| |||||| ||| ||| ||||    
T  23328188 aaccacccatcgtcactactcacccccaaagaacaccactcaaaat 23328233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 27399246 - 27399140
Alignment:
Q  3 acatcaccacctaaaacaaacttattcacgtcaacgaccactgaaaaacgatatacataa-ccacccatcgtcactactcaccccgaaagaagaccgctc 101  Q
    |||||| |||||||||||  ||  |||||| |||||||||||||||| ||||||  |||| |||||||| | ||||||||| ||| |||||| |||  ||    
T  27399246 acatcatcacctaaaacaggctccttcacg-caacgaccactgaaaa-cgatatctataaaccacccattgccactactcagcccaaaagaacacccgtc 27399149  T
Q  102 taaatgaaa 110  Q
    |||||||||    
T  27399148 taaatgaaa 27399140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 33143733 - 33143813
Alignment:
Q  6 tcaccacctaaaacaaacttattcacgtcaacgaccactgaa-aaacgatatacataaccacccatcgtcactactcaccc 85  Q
    |||||||||||||||||||  ||||||  ||| ||||||||| ||||||||| ||   ||| || ||||||||||||||||    
T  33143733 tcaccacctaaaacaaactccttcacgaaaaccaccactgaacaaacgatatccaaccccatccgtcgtcactactcaccc 33143813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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