View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261A_low_319 (Length: 241)

Name: NF10261A_low_319
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261A_low_319
NF10261A_low_319
[»] chr3 (9 HSPs)
chr3 (96-222)||(23601237-23601363)
chr3 (96-211)||(29308870-29308987)
chr3 (96-218)||(6177032-6177156)
chr3 (111-222)||(2814050-2814163)
chr3 (96-219)||(7146505-7146628)
chr3 (96-222)||(25873662-25873791)
chr3 (134-222)||(6517923-6518011)
chr3 (139-220)||(9378603-9378684)
chr3 (139-184)||(13447989-13448034)
[»] chr1 (13 HSPs)
chr1 (96-222)||(32353847-32353973)
chr1 (96-222)||(48073982-48074109)
chr1 (104-222)||(38231157-38231277)
chr1 (96-211)||(3692091-3692207)
chr1 (159-222)||(37530091-37530154)
chr1 (139-195)||(36305292-36305348)
chr1 (129-184)||(14119108-14119163)
chr1 (134-196)||(8982376-8982438)
chr1 (139-185)||(17921596-17921642)
chr1 (134-196)||(28053875-28053937)
chr1 (139-195)||(36928675-36928731)
chr1 (96-160)||(47785889-47785955)
chr1 (139-185)||(47115797-47115843)
[»] chr4 (12 HSPs)
chr4 (96-222)||(23874026-23874153)
chr4 (96-222)||(55298086-55298213)
chr4 (96-222)||(12776757-12776886)
chr4 (96-219)||(20673171-20673296)
chr4 (96-218)||(8487535-8487659)
chr4 (99-222)||(33312864-33312989)
chr4 (139-211)||(2630906-2630978)
chr4 (134-222)||(42072825-42072912)
chr4 (143-208)||(23279118-23279183)
chr4 (143-185)||(7663825-7663867)
chr4 (143-195)||(1121553-1121605)
chr4 (141-185)||(3130563-3130607)
[»] chr7 (10 HSPs)
chr7 (96-222)||(13439516-13439643)
chr7 (96-222)||(28326819-28326946)
chr7 (96-222)||(30385662-30385790)
chr7 (99-212)||(3632268-3632383)
chr7 (18-80)||(32592943-32593005)
chr7 (147-222)||(45235465-45235540)
chr7 (139-213)||(3104410-3104484)
chr7 (139-195)||(21277627-21277683)
chr7 (139-194)||(15654283-15654338)
chr7 (129-202)||(12383147-12383220)
[»] chr5 (5 HSPs)
chr5 (96-222)||(34858243-34858370)
chr5 (96-222)||(6264748-6264878)
chr5 (134-222)||(32917819-32917907)
chr5 (96-203)||(34480417-34480527)
chr5 (133-222)||(15500196-15500285)
[»] chr2 (13 HSPs)
chr2 (96-222)||(33547335-33547462)
chr2 (96-222)||(26681343-26681471)
chr2 (96-222)||(35694095-35694223)
chr2 (96-222)||(43626961-43627088)
chr2 (134-222)||(31594055-31594144)
chr2 (96-222)||(9949814-9949943)
chr2 (96-196)||(31086212-31086314)
chr2 (104-178)||(16779782-16779858)
chr2 (134-222)||(13549626-13549714)
chr2 (134-222)||(22052129-22052217)
chr2 (154-195)||(16103660-16103701)
chr2 (139-185)||(45421025-45421071)
chr2 (139-185)||(32145410-32145456)
[»] chr6 (8 HSPs)
chr6 (96-222)||(8873376-8873504)
chr6 (96-211)||(13754928-13755045)
chr6 (96-222)||(15673287-15673415)
chr6 (96-184)||(14003427-14003517)
chr6 (96-218)||(23348020-23348144)
chr6 (134-222)||(19348776-19348864)
chr6 (134-185)||(25317365-25317416)
chr6 (134-185)||(26204859-26204910)
[»] chr8 (5 HSPs)
chr8 (96-211)||(16421569-16421686)
chr8 (96-222)||(2871654-2871781)
chr8 (141-212)||(35405253-35405324)
chr8 (139-195)||(12220709-12220765)
chr8 (139-195)||(7451860-7451916)
[»] scaffold0287 (1 HSPs)
scaffold0287 (99-212)||(13702-13817)
[»] scaffold0418 (1 HSPs)
scaffold0418 (143-185)||(7186-7228)


Alignment Details
Target: chr3 (Bit Score: 107; Significance: 9e-54; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 23601237 - 23601363
Alignment:
Q  96 aacaagctaaaatgaaattatatacgaactagtagtttcaaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaaac 195  Q
    ||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23601237 aacaagccaaaatgaaattatatacgaattagtagttccaaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaaac 23601336  T
Q  196 aaaacacaacagaaaaaccttagccaa 222  Q
    ||||||||||| |||||| ||||||||    
T  23601337 aaaacacaacataaaaacattagccaa 23601363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 96 - 211
Target Start/End: Original strand, 29308870 - 29308987
Alignment:
Q  96 aacaagctaaaatgaaattatatacgaacta--gtagtttcaaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaa 193  Q
    ||||||| |||||| ||||||||||||| ||  |||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  29308870 aacaagccaaaatggaattatatacgaaatatggtagtcccaaacgcacaagatgtgccttagagactacctcagaaaccaagagttacaacggttacaa 29308969  T
Q  194 acaaaacacaacagaaaa 211  Q
    ||||||||||||||||||    
T  29308970 acaaaacacaacagaaaa 29308987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 96 - 218
Target Start/End: Complemental strand, 6177156 - 6177032
Alignment:
Q  96 aacaagctaaaatgaaattatatacgaactag--tagtttcaaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaa 193  Q
    |||||||||||||| ||||||||||||| |||  |||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||  ||||||    
T  6177156 aacaagctaaaatggaattatatacgaaatagggtagtctcaaatgcacaagatgtgccttagagactacctcagaaaccaagagttacaacaattacaa 6177057  T
Q  194 acaaaacacaacagaaaaaccttag 218  Q
    |||||||||| ||||||||| ||||    
T  6177056 acaaaacacaccagaaaaacattag 6177032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 111 - 222
Target Start/End: Complemental strand, 2814163 - 2814050
Alignment:
Q  111 aattatatacgaactag--tagtttcaaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaaacaaaacacaacaga 208  Q
    ||||||||||||| |||  ||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  2814163 aattatatacgaaataggatagtcccaaacgcacaaggtgtgtcttagagactacctcagaaaccaagagttacaacggttacaaacaaaacacactaga 2814064  T
Q  209 aaaaccttagccaa 222  Q
    ||||| ||||||||    
T  2814063 aaaacattagccaa 2814050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 96 - 219
Target Start/End: Original strand, 7146505 - 7146628
Alignment:
Q  96 aacaagctaaaatgaaattatatacgaactag--tagtttcaaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaa 193  Q
    ||||||| |||||| ||||||||||||| |||  ||||| | |||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  7146505 aacaagccaaaatggaattatatacgaa-tagggtagttcccaacgcataaggtgtgccttagagactaccacagaaaccaagagttacaatggttacaa 7146603  T
Q  194 acaaaacacaacagaaaaaccttagc 219  Q
    |||||| ||| ||||||||| |||||    
T  7146604 acaaaa-acagcagaaaaacattagc 7146628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 96 - 222
Target Start/End: Complemental strand, 25873791 - 25873662
Alignment:
Q  96 aacaagctaaaatgaaattatatacgaactagt--agtttcaaacgcacaaggtgtgcctta-gagactacctcagaaaccaagagttacaacggttaca 192  Q
    ||||||||| |||| ||||||||| ||| |||   |||  |||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||    
T  25873791 aacaagctagaatggaattatatatgaaatagggcagtcccaaacgcacaaggtgtgccttttgcgactacctcagaaaccaagagttacaacggttaca 25873692  T
Q  193 aacaaaacacaacagaaaaaccttagccaa 222  Q
    ||||| ||||| || |||||| ||||||||    
T  25873691 aacaagacacagcataaaaacattagccaa 25873662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 6518011 - 6517923
Alignment:
Q  134 caaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaaacaaaacacaacagaaaaaccttagccaa 222  Q
    |||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||| |||||| ||||||  ||||| ||||||||    
T  6518011 caaacgcacaaggtgtgccttagagactacctcaaaaatcaagaattacaacggttacacacaaaatacaacaagaaaacattagccaa 6517923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 9378603 - 9378684
Alignment:
Q  139 gcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaaacaaaacacaacagaaaaaccttagcc 220  Q
    |||||| |||||||||  ||||| | |||||||||||||||| |||| |||||||||| |||||| ||||| ||| ||||||    
T  9378603 gcacaatgtgtgccttgaagacttcttcagaaaccaagagtttcaacagttacaaacataacacagcagaacaacgttagcc 9378684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 13447989 - 13448034
Alignment:
Q  139 gcacaaggtgtgccttagagactacctcagaaaccaagagttacaa 184  Q
    |||||||||||||| ||||||||||  ||| |||||||||||||||    
T  13447989 gcacaaggtgtgccatagagactacagcaggaaccaagagttacaa 13448034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 9e-54; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 96 - 222
Target Start/End: Complemental strand, 32353973 - 32353847
Alignment:
Q  96 aacaagctaaaatgaaattatatacgaactagtagtttcaaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaaac 195  Q
    |||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32353973 aacaagctaaaatggaattatatacgaattagtagttccaaacgcacaaggtgtgccttagagactacctcaaaaaccaagagttacaacggttacaaac 32353874  T
Q  196 aaaacacaacagaaaaaccttagccaa 222  Q
    |||||||||||||||||| ||||||||    
T  32353873 aaaacacaacagaaaaacattagccaa 32353847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 96 - 222
Target Start/End: Complemental strand, 48074109 - 48073982
Alignment:
Q  96 aacaagctaaaatgaaattatatacgaactagtagtttcaaacgcacaaggtgtgcctt-agagactacctcagaaaccaagagttacaacggttacaaa 194  Q
    ||||||| |||||| ||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |    
T  48074109 aacaagccaaaatggaattatatacgaattagtagttccaaacgcacaaggtgtgcctttagagactacctcagaaaccaagagttacaacgattacata 48074010  T
Q  195 caaaacacaacagaaaaaccttagccaa 222  Q
    ||||||||||||||||||||||||||||    
T  48074009 caaaacacaacagaaaaaccttagccaa 48073982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 104 - 222
Target Start/End: Original strand, 38231157 - 38231277
Alignment:
Q  104 aaaatgaaattatatacgaactag--tagtttcaaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaaacaaaaca 201  Q
    |||||| ||||||||||||| |||  ||||  ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  38231157 aaaatggaattatatacgaaatagggtagtcccaaacgcacaaggtgtgccttagagacaacatcagaaaccaagagttacaacggttacaaacaaaaca 38231256  T
Q  202 caacagaaaaaccttagccaa 222  Q
    || ||| ||||| ||||||||    
T  38231257 caccaggaaaacattagccaa 38231277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 96 - 211
Target Start/End: Original strand, 3692091 - 3692207
Alignment:
Q  96 aacaagctaaaatgaaattatatacgaactag--tagtttcaaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaa 193  Q
    |||||| |||||||||||||||||||||  ||  ||||   ||| ||| ||| |||||||||||||||| ||||||||  |||| |||||||||||||||    
T  3692091 aacaagttaaaatgaaattatatacgaaaaaggatagtcctaaaagcataagatgtgccttagagactatctcagaaattaaga-ttacaacggttacaa 3692189  T
Q  194 acaaaacacaacagaaaa 211  Q
    ||||||||||||| ||||    
T  3692190 acaaaacacaacataaaa 3692207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 222
Target Start/End: Original strand, 37530091 - 37530154
Alignment:
Q  159 actacctcagaaaccaagagttacaacggttacaaacaaaacacaacagaaaaaccttagccaa 222  Q
    |||||||||||||| ||||||||||||||||||||| || | ||||||||||||| ||||||||    
T  37530091 actacctcagaaactaagagttacaacggttacaaataagatacaacagaaaaacattagccaa 37530154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 36305292 - 36305348
Alignment:
Q  139 gcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaaac 195  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||  ||||||||    
T  36305292 gcacaaggtgtgccttagagactaccacaggaaccaagagttacaacaattacaaac 36305348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 129 - 184
Target Start/End: Original strand, 14119108 - 14119163
Alignment:
Q  129 agtttcaaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaa 184  Q
    |||| |||||| ||||||||||| |||||||||||||| |||||||||||||||||    
T  14119108 agttccaaacgtacaaggtgtgctttagagactacctctgaaaccaagagttacaa 14119163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 8982376 - 8982438
Alignment:
Q  134 caaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaaaca 196  Q
    |||||||||||| ||||||||||||||||||||  ||||||||| |||||| || ||||||||    
T  8982376 caaacgcacaagatgtgccttagagactacctccaaaaccaagaattacaaggggtacaaaca 8982438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 17921642 - 17921596
Alignment:
Q  139 gcacaaggtgtgccttagagactacctcagaaaccaagagttacaac 185  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||    
T  17921642 gcacaaggtgtgccttagagactactacagaaaccaagagttacaac 17921596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 28053937 - 28053875
Alignment:
Q  134 caaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaaaca 196  Q
    |||| ||||||||||| |||||||||||||  |||||| |||||||||||||| |||||||||    
T  28053937 caaaagcacaaggtgtaccttagagactactgcagaaatcaagagttacaacgattacaaaca 28053875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 36928675 - 36928731
Alignment:
Q  139 gcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaaac 195  Q
    ||||||||||||||||||||||||||  || ||||||||||||||||  ||||||||    
T  36928675 gcacaaggtgtgccttagagactaccataggaaccaagagttacaacaattacaaac 36928731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 47785889 - 47785955
Alignment:
Q  96 aacaagctaaaatgaaattatatacgaactag--tagtttcaaacgcacaaggtgtgccttagagac 160  Q
    ||||||| |||||| ||||||||||||| |||  ||||  |||||||||||||||||||||||||||    
T  47785889 aacaagccaaaatggaattatatacgaaatagggtagtcccaaacgcacaaggtgtgccttagagac 47785955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 47115797 - 47115843
Alignment:
Q  139 gcacaaggtgtgccttagagactacctcagaaaccaagagttacaac 185  Q
    |||||||||||| ||||||||||||  ||||||||||||||||||||    
T  47115797 gcacaaggtgtgtcttagagactacaacagaaaccaagagttacaac 47115843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 96 - 222
Target Start/End: Complemental strand, 23874153 - 23874026
Alignment:
Q  96 aacaagctaaaatgaaattatatacgaactagtagtttcaaacgcacaaggtgtgcctt-agagactacctcagaaaccaagagttacaacggttacaaa 194  Q
    ||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  23874153 aacaagccaaaatggaattatatacgaattagtagtttcaaacgcacaaggtgtgcctttagagactacctcagaaaccaagagttacaacggttacata 23874054  T
Q  195 caaaacacaacagaaaaaccttagccaa 222  Q
    ||||||||||||||||||||||||||||    
T  23874053 caaaacacaacagaaaaaccttagccaa 23874026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 55298086 - 55298213
Alignment:
Q  96 aacaagctaaaatgaaattatatacgaactagtagtttcaaacgcacaaggtgtgcctt-agagactacctcagaaaccaagagttacaacggttacaaa 194  Q
    ||||||| |||||| ||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |    
T  55298086 aacaagccaaaatggaattatatacgaattagtagttccaaacgcacaaggtgtgcctttagagactacctcagaaaccaagagttacaacgattacata 55298185  T
Q  195 caaaacacaacagaaaaaccttagccaa 222  Q
    ||||||||||||||||||||||||||||    
T  55298186 caaaacacaacagaaaaaccttagccaa 55298213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 96 - 222
Target Start/End: Complemental strand, 12776886 - 12776757
Alignment:
Q  96 aacaagctaaaatgaaattatatacgaactag--tagtttcaaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttac-a 192  Q
    |||||||||||||| ||||||||||||| |||  ||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||| |    
T  12776886 aacaagctaaaatggaattatatacgaaatagggtagttccaaacgcacaaggtgtgcctaagagactacctcaggaaccaagagttacaacgattacaa 12776787  T
Q  193 aacaaaacacaacagaaaaaccttagccaa 222  Q
    || |||||||||||||||||| ||||||||    
T  12776786 aaaaaaacacaacagaaaaacattagccaa 12776757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 96 - 219
Target Start/End: Original strand, 20673171 - 20673296
Alignment:
Q  96 aacaagctaaaatgaaattatatacgaactag--tagtttcaaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaa 193  Q
    ||||||| |||||| ||||||||||||| |||  ||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||    
T  20673171 aacaagccaaaatggaattatatacgaaatagggtagttccaaacgcacaaggtgtgcctaagagactacctcaggaaccaagagttacaacgattacaa 20673270  T
Q  194 acaaaacacaacagaaaaaccttagc 219  Q
    ||||||||||||| |||||| |||||    
T  20673271 acaaaacacaacataaaaacattagc 20673296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 96 - 218
Target Start/End: Complemental strand, 8487659 - 8487535
Alignment:
Q  96 aacaagctaaaatgaaattatatacgaactag--tagtttcaaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaa 193  Q
    ||||||| |||||| ||||||||||||| |||  ||||  |||||||||||| ||||||| ||||||||||||||||||||||||||| |||  ||||||    
T  8487659 aacaagccaaaatggaattatatacgaaataggttagtcccaaacgcacaagatgtgcctaagagactacctcagaaaccaagagttataacaattacaa 8487560  T
Q  194 acaaaacacaacagaaaaaccttag 218  Q
    |||||||||| ||||||||| ||||    
T  8487559 acaaaacacaccagaaaaacattag 8487535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 99 - 222
Target Start/End: Original strand, 33312864 - 33312989
Alignment:
Q  99 aagctaaaatgaaattatatacgaactag--tagtttcaaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaaaca 196  Q
    |||| |||||| ||||||||||||| ||   ||||  |||||| |||||||||||||||||||||||||||| || ||||||||| |||| |||||||||    
T  33312864 aagccaaaatggaattatatacgaaatatgatagtcccaaacgtacaaggtgtgccttagagactacctcaggaatcaagagttataacgattacaaaca 33312963  T
Q  197 aaacacaacagaaaaaccttagccaa 222  Q
    ||||||||||||||| | ||||||||    
T  33312964 aaacacaacagaaaatcattagccaa 33312989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 2630906 - 2630978
Alignment:
Q  139 gcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaaacaaaacacaacagaaaa 211  Q
    ||||||| ||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2630906 gcacaagatgtgccgaagagactacctcataaaccaagagttacaacggttacaaacaaaacacaacagaaaa 2630978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 42072912 - 42072825
Alignment:
Q  134 caaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaaacaaaacacaacagaaaaaccttagccaa 222  Q
    ||||||||||||||||||| ||| |||||||||  |||||||||||||||| |||||||| |||  || |||||||| || ||||||||    
T  42072912 caaacgcacaaggtgtgccctagtgactacctccaaaaccaagagttacaa-ggttacaaccaagccataacagaaagacattagccaa 42072825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 23279118 - 23279183
Alignment:
Q  143 aaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaaacaaaacacaacaga 208  Q
    ||||||||||||||||||| || |||||||||| |||||||||  |||||||| | ||||| ||||    
T  23279118 aaggtgtgccttagagactgccacagaaaccaaaagttacaacaattacaaaccacacacagcaga 23279183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 7663867 - 7663825
Alignment:
Q  143 aaggtgtgccttagagactacctcagaaaccaagagttacaac 185  Q
    |||||||||||||||||||||  ||| ||||||||||||||||    
T  7663867 aaggtgtgccttagagactactacaggaaccaagagttacaac 7663825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 1121605 - 1121553
Alignment:
Q  143 aaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaaac 195  Q
    ||||||||||||||| |||||| ||||  ||||||||||||||  ||||||||    
T  1121605 aaggtgtgccttagaaactaccacagagtccaagagttacaacaattacaaac 1121553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 3130607 - 3130563
Alignment:
Q  141 acaaggtgtgccttagagactacctcagaaaccaagagttacaac 185  Q
    |||||||||||| ||||||||||  ||| ||||||||||||||||    
T  3130607 acaaggtgtgccgtagagactacaacaggaaccaagagttacaac 3130563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 13439516 - 13439643
Alignment:
Q  96 aacaagctaaaatgaaattatatacgaactagtagtttcaaacgcacaaggtgtgcctt-agagactacctcagaaaccaagagttacaacggttacaaa 194  Q
    ||||||| |||||| ||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |    
T  13439516 aacaagccaaaatggaattatatacgaattagtagttccaaacgcacaaggtgtgcctttagagactacctcagaaaccaagagttacaacgattacata 13439615  T
Q  195 caaaacacaacagaaaaaccttagccaa 222  Q
    ||||||||||||||||||||||||||||    
T  13439616 caaaacacaacagaaaaaccttagccaa 13439643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 28326819 - 28326946
Alignment:
Q  96 aacaagctaaaatgaaattatatacgaactag--tagtttcaaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaa 193  Q
    ||||||| |||||| ||||||||||||| |||  ||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28326819 aacaagccaaaatggaattatatacgaa-tagggtagttcccaacgcacaaggtgtgccttagagactaccacagaaaccaagagttacaacggttacaa 28326917  T
Q  194 acaaaacacaacagaaaaaccttagccaa 222  Q
    |||||| ||||||||||||| ||||||||    
T  28326918 acaaaaaacaacagaaaaacattagccaa 28326946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 30385662 - 30385790
Alignment:
Q  96 aacaagctaaaatgaaattatatacgaactag--tagtttcaaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaa 193  Q
    ||||||| |||||| ||||||||| ||| |||  ||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30385662 aacaagccaaaatggaattatatatgaaatagggtagtcccaaacgcacaaggtgtgccttagagactacatcagaaaccaagagttacaacggttacaa 30385761  T
Q  194 acaaaacacaacagaaaaaccttagccaa 222  Q
    |||| ||||| ||||||||| ||||||||    
T  30385762 acaagacacaccagaaaaacattagccaa 30385790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 99 - 212
Target Start/End: Original strand, 3632268 - 3632383
Alignment:
Q  99 aagctaaaatgaaattatatacgaactag--tagtttcaaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaaaca 196  Q
    |||| |||||| ||||||||||||| |||  ||||  |||||| ||||||||||||||||||||||||||| |||| ||||||||||||  |||||||||    
T  3632268 aagccaaaatggaattatatacgaaatagggtagtcccaaacgtacaaggtgtgccttagagactacctcaaaaactaagagttacaacaattacaaaca 3632367  T
Q  197 aaacacaacagaaaaa 212  Q
    ||||||| ||||||||    
T  3632368 aaacacaccagaaaaa 3632383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 32592943 - 32593005
Alignment:
Q  18 aaatttatataaggatgtcaatttatccagtcaaacagacatatatgtgatcatgactttttt 80  Q
    |||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  32592943 aaatctatataaggatgtcaatttatcccgttaaacagacatatatgtgatcatgactttttt 32593005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 45235465 - 45235540
Alignment:
Q  147 tgtgccttagagactacctcagaaaccaagagttacaacggttacaaacaaaacacaacagaaaaaccttagccaa 222  Q
    |||| ||||||||||||||||||||  |||||||||||||||||||||||| ||||| |||||||||  |||||||    
T  45235465 tgtgtcttagagactacctcagaaattaagagttacaacggttacaaacaagacacagcagaaaaacaatagccaa 45235540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 3104410 - 3104484
Alignment:
Q  139 gcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaaacaaaacacaacagaaaaac 213  Q
    |||||| |||||||||||||||||   ||||||||||||||||||||| || |||||| | ||||||||||||||    
T  3104410 gcacaaagtgtgccttagagactattgcagaaaccaagagttacaacgattgcaaacagagcacaacagaaaaac 3104484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 21277683 - 21277627
Alignment:
Q  139 gcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaaac 195  Q
    ||||||||||||||||||| |||||| ||| ||||||||||||||||  ||||||||    
T  21277683 gcacaaggtgtgccttagacactaccacaggaaccaagagttacaacaattacaaac 21277627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 194
Target Start/End: Complemental strand, 15654338 - 15654283
Alignment:
Q  139 gcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaaa 194  Q
    |||||||||||| ||||||||||||  ||| ||||||||||||||||  |||||||    
T  15654338 gcacaaggtgtgtcttagagactactacaggaaccaagagttacaacaattacaaa 15654283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 12383220 - 12383147
Alignment:
Q  129 agtttcaaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaaacaaaacac 202  Q
    |||| |||| |||||||||||||||| || |||||  ||| ||||||||||||||| | |||||| || |||||    
T  12383220 agttccaaatgcacaaggtgtgccttggaaactactgcaggaaccaagagttacaaagattacaaccagaacac 12383147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 96 - 222
Target Start/End: Complemental strand, 34858370 - 34858243
Alignment:
Q  96 aacaagctaaaatgaaattatatacgaactagtagtttcaaacgcacaaggtgtgcctt-agagactacctcagaaaccaagagttacaacggttacaaa 194  Q
    ||||||| |||||| ||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |    
T  34858370 aacaagccaaaatggaattatatacgaattagtagttccaaacgcacaaggtgtgcctttagagactacctcagaaaccaagagttacaacgattacata 34858271  T
Q  195 caaaacacaacagaaaaaccttagccaa 222  Q
    ||||||||||||||||||||||||||||    
T  34858270 caaaacacaacagaaaaaccttagccaa 34858243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 96 - 222
Target Start/End: Complemental strand, 6264878 - 6264748
Alignment:
Q  96 aacaagctaaaatgaaattatatacgaactagt--agtttcaaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggtt--ac 191  Q
    ||||||| |||||| ||||||||||||| |||   |||  |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||  ||    
T  6264878 aacaagccaaaatggaattatatacgaaatagggcagtcccaaacgtacaaggtgtgccttagagactacctcagaaaccaagagttacaacgattacac 6264779  T
Q  192 aaacaaaacacaacagaaaaaccttagccaa 222  Q
    |||||| ||||||| ||||||| ||||||||    
T  6264778 aaacaagacacaactgaaaaacattagccaa 6264748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 32917819 - 32917907
Alignment:
Q  134 caaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaaacaaaacacaacagaaaaaccttagccaa 222  Q
    ||||||||||||||||||| |||||||||||||  ||| |||||||||||| |||||||| |||  ||||||||||| || ||||||||    
T  32917819 caaacgcacaaggtgtgccctagagactacctccaaaatcaagagttacaagggttacaaccaagccacaacagaaagacattagccaa 32917907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 96 - 203
Target Start/End: Original strand, 34480417 - 34480527
Alignment:
Q  96 aacaagctaaaatgaaattatatacgaactagt--agtttcaaacgcacaaggtgtgcctta-gagactacctcagaaaccaagagttacaacggttaca 192  Q
    ||||||| |||||||||||||||||||| |||   |||  ||||||||||| |||||||||  | ||||||||||||| |||||| ||||||||||||||    
T  34480417 aacaagccaaaatgaaattatatacgaaatagggcagtcccaaacgcacaacgtgtgccttttgcgactacctcagaagccaagaattacaacggttaca 34480516  T
Q  193 aacaaaacaca 203  Q
    ||||| |||||    
T  34480517 aacaagacaca 34480527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 15500285 - 15500196
Alignment:
Q  133 tcaaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaaacaaaacacaacagaaaaaccttagccaa 222  Q
    ||||||||| |||||||||| |||||||||||||  ||||||| ||||||||  ||||||| |||  || |||||||| || ||||||||    
T  15500285 tcaaacgcataaggtgtgccctagagactacctccaaaaccaacagttacaagtgttacaaccaagccaaaacagaaagacattagccaa 15500196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 33547335 - 33547462
Alignment:
Q  96 aacaagctaaaatgaaattatatacgaactagtagtttcaaacgcacaaggtgtgcctt-agagactacctcagaaaccaagagttacaacggttacaaa 194  Q
    ||||||| |||||| ||||||||||||| |||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| |    
T  33547335 aacaagccaaaatggaattatatacgaattagtagttccaaacgtacaaggtgtgcctttagagactacctcagaaaccaagagttacaacgattacata 33547434  T
Q  195 caaaacacaacagaaaaaccttagccaa 222  Q
    ||||||||||||||||||||||||||||    
T  33547435 caaaacacaacagaaaaaccttagccaa 33547462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 26681343 - 26681471
Alignment:
Q  96 aacaagctaaaatgaaattatatacgaactagt--agtttcaaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaa 193  Q
    ||||||| |||||| ||||||||||||| |||   ||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  26681343 aacaagccaaaatggaattatatacgaaatagggcagtctcaaacgcacaaggtgtgtcttagagattacctcagaaaccaagagttacaacggttacaa 26681442  T
Q  194 acaaaacacaacagaaaaaccttagccaa 222  Q
    |||| ||||||| ||||||| ||||||||    
T  26681443 acaagacacaactgaaaaacattagccaa 26681471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 35694095 - 35694223
Alignment:
Q  96 aacaagctaaaatgaaattatatacgaactagta--gtttcaaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaa 193  Q
    ||||||| |||||| |||||||||| || ||| |  || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35694095 aacaagccaaaatggaattatatactaattaggacagtctcaaacgcacaaagtgtgccttagagactacctcagaaaccaagagttacaacggttacaa 35694194  T
Q  194 acaaaacacaacagaaaaaccttagccaa 222  Q
    |||| ||| | ||||||||| ||||||||    
T  35694195 acaagacatagcagaaaaacattagccaa 35694223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 43626961 - 43627088
Alignment:
Q  96 aacaagctaaaatgaaattatatacgaactag--tagtttcaaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaa 193  Q
    |||||||||||||  ||||||||||||| |||  ||||| | |||||| |||||||||||||||||||||| || |||||||||||||||||||||||||    
T  43626961 aacaagctaaaatagaattatatacgaa-tagggtagttcccaacgcaaaaggtgtgccttagagactaccacaaaaaccaagagttacaacggttacaa 43627059  T
Q  194 acaaaacacaacagaaaaaccttagccaa 222  Q
    |||||| ||||||||||||| ||||||||    
T  43627060 acaaaaaacaacagaaaaacattagccaa 43627088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 31594055 - 31594144
Alignment:
Q  134 caaacgcacaaggtgtgcctta-gagactacctcagaaaccaagagttacaacggttacaaacaaaacacaacagaaaaaccttagccaa 222  Q
    |||||||| ||||||||||||  | |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||    
T  31594055 caaacgcataaggtgtgccttttgcgactacctcagaaaccaagagttacaacggttactaacaagacacaacagaaaaacattagccaa 31594144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 222
Target Start/End: Complemental strand, 9949943 - 9949814
Alignment:
Q  96 aacaagctaaaatgaaattatatacgaactagt--agtttcaaacgcacaaggtgtgcctta-gagactacctcagaaaccaagagttacaacggttaca 192  Q
    ||||||| |||||| ||||||||||||| |||   |||  |||||||||||||||||||||  | ||||||||||||| |||||||||||||||||||||    
T  9949943 aacaagccaaaatggaattatatacgaaatagggcagtcccaaacgcacaaggtgtgccttttgcgactacctcagaagccaagagttacaacggttaca 9949844  T
Q  193 aacaaaacacaacagaaaaaccttagccaa 222  Q
    ||||| ||||| || ||| || ||||||||    
T  9949843 aacaagacacagcaaaaagacattagccaa 9949814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 96 - 196
Target Start/End: Complemental strand, 31086314 - 31086212
Alignment:
Q  96 aacaagctaaaatgaaattatatacgaactagt--agtttcaaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaa 193  Q
    ||||||| ||||||||||||||||| ||  ||   |||  |||| ||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||    
T  31086314 aacaagccaaaatgaaattatatactaaacagagcagtcccaaaagcacaaggtgtaccttagagactacttcagaaaccaagagttacaacgattacaa 31086215  T
Q  194 aca 196  Q
    |||    
T  31086214 aca 31086212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 178
Target Start/End: Original strand, 16779782 - 16779858
Alignment:
Q  104 aaaatgaaattatatacgaactag--tagtttcaaacgcacaaggtgtgccttagagactacctcagaaaccaagag 178  Q
    |||||||||||||||||||| |||  ||||   ||||||| ||||||||||||||||||||||||||||||||||||    
T  16779782 aaaatgaaattatatacgaaatagggtagtcctaaacgcataaggtgtgccttagagactacctcagaaaccaagag 16779858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 13549626 - 13549714
Alignment:
Q  134 caaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaaacaaaacacaacagaaaaaccttagccaa 222  Q
    ||||||||||||||||||| ||| |||||||||  ||||||||||||||||   |||||| |||  ||||||||||| || ||||||||    
T  13549626 caaacgcacaaggtgtgccctagcgactacctccaaaaccaagagttacaagaattacaaccaagccacaacagaaagacattagccaa 13549714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 22052129 - 22052217
Alignment:
Q  134 caaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaaacaaaacacaacagaaaaaccttagccaa 222  Q
    |||||||| |||||||||| |||||||||||||| ||||||| ||||||||  ||||||| |||  || |||||||| || ||||||||    
T  22052129 caaacgcataaggtgtgccctagagactacctcaaaaaccaacagttacaagtgttacaaccaagccataacagaaagacattagccaa 22052217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 16103660 - 16103701
Alignment:
Q  154 tagagactacctcagaaaccaagagttacaacggttacaaac 195  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  16103660 tagagactacctcagaaactaagagttacaacggttacaaac 16103701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 45421025 - 45421071
Alignment:
Q  139 gcacaaggtgtgccttagagactacctcagaaaccaagagttacaac 185  Q
    |||||||||||||||||||||||||  ||| ||||||||||||||||    
T  45421025 gcacaaggtgtgccttagagactactacaggaaccaagagttacaac 45421071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 32145410 - 32145456
Alignment:
Q  139 gcacaaggtgtgccttagagactacctcagaaaccaagagttacaac 185  Q
    ||||||||||||||||||| |||||  |||||| |||||||||||||    
T  32145410 gcacaaggtgtgccttagaaactactgcagaaatcaagagttacaac 32145456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 96 - 222
Target Start/End: Complemental strand, 8873504 - 8873376
Alignment:
Q  96 aacaagctaaaatgaaattatatacgaactagt--agtttcaaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaa 193  Q
    ||||||| ||||| |||||||||||||| |||   |||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8873504 aacaagccaaaataaaattatatacgaaatagggcagtcccaaacgcacaaggtgtgccttagagactacctcagaaactaagagttacaacggttacaa 8873405  T
Q  194 acaaaacacaacagaaaaaccttagccaa 222  Q
    |||| ||||||| ||||||| ||||||||    
T  8873404 acaagacacaactgaaaaacattagccaa 8873376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 96 - 211
Target Start/End: Original strand, 13754928 - 13755045
Alignment:
Q  96 aacaagctaaaatgaaattatatacgaactag--tagtttcaaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaa 193  Q
    ||||||| |||||  ||||||||||||| |||  ||||  |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  13754928 aacaagccaaaatagaattatatacgaaatagggtagtcccaaacgcacaagatatgccttagagactacctcagaaaccaagagttacaacggttacaa 13755027  T
Q  194 acaaaacacaacagaaaa 211  Q
    ||||||||||||||||||    
T  13755028 acaaaacacaacagaaaa 13755045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 15673287 - 15673415
Alignment:
Q  96 aacaagctaaaatgaaattatatacgaactag--tagtttcaaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaa 193  Q
    ||||||| |||||| ||||||||||||| |||  ||||  |||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||    
T  15673287 aacaagccaaaatggaattatatacgaaatagggtagtcccaaacgcacaaggtgtgcgttagagactacctcagaaatcaagagttacaacgtttacaa 15673386  T
Q  194 acaaaacacaacagaaaaaccttagccaa 222  Q
    |||||||||| ||||| ||| ||||||||    
T  15673387 acaaaacacaccagaacaacattagccaa 15673415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 96 - 184
Target Start/End: Complemental strand, 14003517 - 14003427
Alignment:
Q  96 aacaagctaaaatgaaattatatacgaacta--gtagtttcaaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaa 184  Q
    |||||| ||||||| ||||||||||||| ||  ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14003517 aacaagataaaatggaattatatacgaaatatggtagtctcaaacgcacaaggtgtgccttagagactacctcagaaatcaagagttacaa 14003427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 218
Target Start/End: Complemental strand, 23348144 - 23348020
Alignment:
Q  96 aacaagctaaaatgaaattatatacgaactag--tagtttcaaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaa 193  Q
    ||||||| |||||| ||||||||||||| |||  ||||  |||||||||||||||||||||||||||||||||||||| | |||||||||||  ||||||    
T  23348144 aacaagccaaaatggaattatatacgaaatagggtagtcccaaacgcacaaggtgtgccttagagactacctcagaaaacgagagttacaacaattacaa 23348045  T
Q  194 acaaaacacaacagaaaaaccttag 218  Q
     ||||| |||  |||||||| ||||    
T  23348044 tcaaaatacactagaaaaacattag 23348020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 19348776 - 19348864
Alignment:
Q  134 caaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaaacaaaacacaacagaaaaaccttagccaa 222  Q
    ||||||||||||||||||| |||||| |||||| ||||||||||||||||| |||||||| |||  ||||||| ||| || ||||||||    
T  19348776 caaacgcacaaggtgtgccctagagattacctccgaaaccaagagttacaaaggttacaaccaagccacaacataaagacattagccaa 19348864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 185
Target Start/End: Original strand, 25317365 - 25317416
Alignment:
Q  134 caaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaac 185  Q
    |||||||| ||||||| || |||||||||||||  |||||||||||||||||    
T  25317365 caaacgcagaaggtgttccctagagactacctccaaaaccaagagttacaac 25317416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 185
Target Start/End: Original strand, 26204859 - 26204910
Alignment:
Q  134 caaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaac 185  Q
    |||||||| ||||||| || |||||||||||||  |||||||||||||||||    
T  26204859 caaacgcagaaggtgttccctagagactacctccaaaaccaagagttacaac 26204910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 96 - 211
Target Start/End: Complemental strand, 16421686 - 16421569
Alignment:
Q  96 aacaagctaaaatgaaattatatacgaactag--tagtttcaaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaa 193  Q
    ||||||| |||||| |||||||||||||  ||  ||||  |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16421686 aacaagccaaaatggaattatatacgaaaaaggatagtcccaaaagcacaagatgtgccttagagactacctcagaaaccaagagttacaacggttacaa 16421587  T
Q  194 acaaaacacaacagaaaa 211  Q
    ||||||||||||||||||    
T  16421586 acaaaacacaacagaaaa 16421569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 2871654 - 2871781
Alignment:
Q  96 aacaagctaaaatgaaattatatacgaactag--tagtttcaaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaa 193  Q
    ||||||| |||||| |||||||||||||  ||  ||||| | |||||||||| |||||||||||||||||| || ||| |||||||||||||||||||||    
T  2871654 aacaagccaaaatggaattatatacgaataagggtagttcccaacgcacaagatgtgccttagagactaccacaaaaatcaagagttacaacggttacaa 2871753  T
Q  194 acaaaacacaacagaaaaaccttagccaa 222  Q
    || ||| |||| |||||||| ||||||||    
T  2871754 accaaa-acaatagaaaaacattagccaa 2871781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 141 - 212
Target Start/End: Original strand, 35405253 - 35405324
Alignment:
Q  141 acaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaaacaaaacacaacagaaaaa 212  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  35405253 acaaggtgtaccttagagactacatcagaaaccaagagttacaacggttacaaacaagacacagcagaaaaa 35405324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 12220765 - 12220709
Alignment:
Q  139 gcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaaac 195  Q
    |||||||||||||||||||||||||| ||| || |||||||||||||  ||||||||    
T  12220765 gcacaaggtgtgccttagagactaccacaggaatcaagagttacaacaattacaaac 12220709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 7451860 - 7451916
Alignment:
Q  139 gcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaaac 195  Q
    ||||||| ||||||||||||||||||  || ||||||||||||||||  ||||||||    
T  7451860 gcacaagctgtgccttagagactaccataggaaccaagagttacaacaattacaaac 7451916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 99 - 212
Target Start/End: Complemental strand, 13817 - 13702
Alignment:
Q  99 aagctaaaatgaaattatatacgaactag--tagtttcaaacgcacaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaaaca 196  Q
    |||| |||||| ||||||||||||| |||  ||||  |||||| ||||||||||||||||||||||||||| |||| ||||||||||||  |||||||||    
T  13817 aagccaaaatggaattatatacgaaatagggtagtcccaaacgtacaaggtgtgccttagagactacctcaaaaactaagagttacaacaattacaaaca 13718  T
Q  197 aaacacaacagaaaaa 212  Q
    ||||||| ||||||||    
T  13717 aaacacaccagaaaaa 13702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 185
Target Start/End: Original strand, 7186 - 7228
Alignment:
Q  143 aaggtgtgccttagagactacctcagaaaccaagagttacaac 185  Q
    |||||||||||||||||||||  ||| ||||||||||||||||    
T  7186 aaggtgtgccttagagactactacaggaaccaagagttacaac 7228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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