View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10261A_low_326 (Length: 240)
Name: NF10261A_low_326
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_326 |
 | |
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| [»] chr7 (6 HSPs) |
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| [»] chr5 (4 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold1795 (1 HSPs) |
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| [»] chr6 (4 HSPs) |
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| [»] scaffold0039 (1 HSPs) |
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| [»] scaffold0510 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 6 - 240
Target Start/End: Original strand, 48349318 - 48349552
Alignment:
| Q |
6 |
gtttggtgtttgtggaattcctggttgtgtttgcaggtatggctccaaagaaacccgttaacactggtaaacgcaagaaaggagaaacatctgcaacccg |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
48349318 |
gtttggtgtttgtggaattcctggttgtgtttgcaggtatggctccaaagaaacccgttaacactggtaaacgcaagaaaggagaaacatccgcaacccg |
48349417 |
T |
|
| Q |
106 |
acccccacctagaaaccaagcctttgagagggagagatttaggtctcgctaccatcaagatagatatattgaactacttgaccaatccatgtggtgtgag |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
48349418 |
acccccacctagaaaccaagcctttgagagggagagatttaggtctcgctaccatcaagatagatatattgaactgcttgaccaatccatgtggtgtgag |
48349517 |
T |
|
| Q |
206 |
agggtcttaaacattaatacagagggaccctataa |
240 |
Q |
| |
|
|||||||| ||| ||||| | |||||||||||||| |
|
|
| T |
48349518 |
agggtctttaaccttaatcccgagggaccctataa |
48349552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 26 - 240
Target Start/End: Original strand, 5052176 - 5052389
Alignment:
| Q |
26 |
ctggttgtgtttgcaggtatggctccaaagaaacccgttaacactggtaaacgcaagaaaggagaaacatctgcaacccgacccccacctagaaaccaag |
125 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| ||||| || ||| | ||||| || |||||||| |||| |||||||||| |||||||||||| |
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|
| T |
5052176 |
ctggttgt-tttgcaggcatggctccaaagaaacctaccaacaccggaaaaagaaagaagggtgaaacatccgcaatccgacccccagctagaaaccaag |
5052274 |
T |
|
| Q |
126 |
cctttgagagggagagatttaggtctcgctaccatcaagatagatatattgaactacttgaccaatccatgtggtgtgagagggtcttaaacattaatac |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||| | |
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|
| T |
5052275 |
cctttgagagggagagatttaggtctcgctaccatcaagatagatatattgaactgcttgaccaatccatgtggtgtgagagggtctttaaccttaatcc |
5052374 |
T |
|
| Q |
226 |
agagggaccctataa |
240 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5052375 |
cgagggaccctataa |
5052389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 201
Target Start/End: Original strand, 1944979 - 1945153
Alignment:
| Q |
26 |
ctggttgtgtttgcaggtatggctccaaagaaacccgttaacactggtaaacgcaagaaaggagaaacatctgcaacccgacccccacctagaaaccaag |
125 |
Q |
| |
|
|||||||| |||||||| ||||| ||||||||||| || || || ||| | |||||||| ||| |||| ||| | ||||||||| | ||||||||| |
|
|
| T |
1944979 |
ctggttgt-tttgcagggatggcaccaaagaaacctacaaataccggaaaatgaaagaaaggcgaaccatccgcacctcgacccccatcccgaaaccaag |
1945077 |
T |
|
| Q |
126 |
cctttgagagggagagatttaggtctcgctaccatcaagatagatatattgaactacttgaccaatccatgtggtg |
201 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||| || ||||| |||||||||||||||||||| |
|
|
| T |
1945078 |
tgtttgagagggagagatttaggtctcgataccatcaagacagatacatagaactgcttgaccaatccatgtggtg |
1945153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 23 - 171
Target Start/End: Original strand, 8188725 - 8188873
Alignment:
| Q |
23 |
ttcctggttgtgtttgcaggtatggctccaaagaaacccgttaacactggtaaacgcaagaaaggagaaacatctgcaacccgacccccacctagaaacc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| || || || ||| | |||||||| |||||||| || | | ||||||||||||||||| |
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|
| T |
8188725 |
ttcctggttgtgtttgcaggtatggctcctaagaaacccgtgaataccggcaaaaggaagaaaggtgaaacatccacatctcaacccccacctagaaacc |
8188824 |
T |
|
| Q |
123 |
aagcctttgagagggagagatttaggtctcgctaccatcaagatagata |
171 |
Q |
| |
|
|| | ||||| | |||||||||| ||||| ||||| ||||| ||||| |
|
|
| T |
8188825 |
aaccatttgaccgagagagatttaaatctcgttaccaccaagacagata |
8188873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 171
Target Start/End: Complemental strand, 14292033 - 14291889
Alignment:
| Q |
26 |
ctggttgtgtttgcaggtatggctccaaagaaacccgttaacactggtaaacgcaagaaaggagaaacatctgcaacccgacccccacctagaaaccaag |
125 |
Q |
| |
|
|||||||| |||||||||||||| || |||||||| || || || || ||| | |||||||| |||||||| || | | ||||||||||||||||||| |
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|
| T |
14292033 |
ctggttgt-tttgcaggtatggcacccaagaaacctgtgaataccggaaaaaggaagaaaggtgaaacatccacatctcaacccccacctagaaaccaac |
14291935 |
T |
|
| Q |
126 |
cctttgagagggagagatttaggtctcgctaccatcaagatagata |
171 |
Q |
| |
|
| ||||| |||||||||| ||||| ||||| ||||| ||||| |
|
|
| T |
14291934 |
catttgaccaagagagatttaaatctcgttaccaccaagacagata |
14291889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 15945390 - 15945301
Alignment:
| Q |
35 |
tttgcaggtatggctccaaagaaacccgttaacactggtaaacgcaagaaaggagaaacatctgcaacccgacccccacctagaaaccaa |
124 |
Q |
| |
|
|||||||||||||| |||| |||| |||||||||| || || ||||||| ||| |||||||| | | | ||||||||||||||||||| |
|
|
| T |
15945390 |
tttgcaggtatggcaccaaggaaaaccgttaacaccggaaaccgcaagacaggtgaaacatccaaatctcaacccccacctagaaaccaa |
15945301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 6 - 240
Target Start/End: Complemental strand, 2964332 - 2964098
Alignment:
| Q |
6 |
gtttggtgtttgtggaattcctggttgtgtttgcaggtatggctccaaagaaacccgttaacactggtaaacgcaagaaaggagaaacatctgcaacccg |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2964332 |
gtttggtgtttgtggaattcctggttgtgtttgcaggtatggctccaaagaaacccgttaacactggtaaacgcaagaaaggagaaacatccgcaacccg |
2964233 |
T |
|
| Q |
106 |
acccccacctagaaaccaagcctttgagagggagagatttaggtctcgctaccatcaagatagatatattgaactacttgaccaatccatgtggtgtgag |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2964232 |
acccccacctagaaaccaagcctttgagagggagagatttaggtctcgctaccatcaagatagatatattgaactgcttgaccaatccatgtggtgtgag |
2964133 |
T |
|
| Q |
206 |
agggtcttaaacattaatacagagggaccctataa |
240 |
Q |
| |
|
|||||||| ||| ||||| | |||||||||||||| |
|
|
| T |
2964132 |
agggtctttaaccttaatcccgagggaccctataa |
2964098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 6 - 240
Target Start/End: Complemental strand, 29978346 - 29978112
Alignment:
| Q |
6 |
gtttggtgtttgtggaattcctggttgtgtttgcaggtatggctccaaagaaacccgttaacactggtaaacgcaagaaaggagaaacatctgcaacccg |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
29978346 |
gtttggtgtttgtggaattcctggttgtgtttgcaggtatggctccaaagaaacccgttaacactggtaaacgcaagaaaggagaaacatccgcaacccg |
29978247 |
T |
|
| Q |
106 |
acccccacctagaaaccaagcctttgagagggagagatttaggtctcgctaccatcaagatagatatattgaactacttgaccaatccatgtggtgtgag |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29978246 |
acccccacctagaaaccaagcctttgagagggagagatttaggtctcgctaccatcaagatagatatattgaactgcttgaccaatccatgtggtgtgag |
29978147 |
T |
|
| Q |
206 |
agggtcttaaacattaatacagagggaccctataa |
240 |
Q |
| |
|
|||||||| ||| ||||| | |||||||||||||| |
|
|
| T |
29978146 |
agggtctttaaccttaatcccgagggaccctataa |
29978112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 6 - 240
Target Start/End: Original strand, 30018296 - 30018530
Alignment:
| Q |
6 |
gtttggtgtttgtggaattcctggttgtgtttgcaggtatggctccaaagaaacccgttaacactggtaaacgcaagaaaggagaaacatctgcaacccg |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30018296 |
gtttggtgtttgtggaattcctggttgtgtttgcaggtatggctccaaagaaacccgttaacactggtaaacgcaagaaaggagaaacatccgcaacccg |
30018395 |
T |
|
| Q |
106 |
acccccacctagaaaccaagcctttgagagggagagatttaggtctcgctaccatcaagatagatatattgaactacttgaccaatccatgtggtgtgag |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30018396 |
acccccacctagaaaccaagcctttgagagggagagatttaggtctcgctaccatcaagatagatatattgaactgcttgaccaatccatgtggtgtgag |
30018495 |
T |
|
| Q |
206 |
agggtcttaaacattaatacagagggaccctataa |
240 |
Q |
| |
|
|||||||| ||| ||||| | |||||||||||||| |
|
|
| T |
30018496 |
agggtctttaaccttaatcccgagggaccctataa |
30018530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 23 - 236
Target Start/End: Complemental strand, 22355230 - 22355017
Alignment:
| Q |
23 |
ttcctggttgtgtttgcaggtatggctccaaagaaacccgttaacactggtaaacgcaagaaaggagaaacatctgcaacccgacccccacctagaaacc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| || || || ||| | |||||||| || ||||| ||| | ||||||||||||||||||| |
|
|
| T |
22355230 |
ttcctggttgtgtttgcaggtatggctcctaagaaacccgtgaataccggaaaaaggaagaaaggtgacacatccgcacctcgacccccacctagaaacc |
22355131 |
T |
|
| Q |
123 |
aagcctttgagagggagagatttaggtctcgctaccatcaagatagatatattgaactacttgaccaatccatgtggtgtgagagggtcttaaacattaa |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||| ||| ||||||| ||||| |||||||| ||||||||||||||||| ||||| ||| |||| |
|
|
| T |
22355130 |
aagcctttgagagggagagatttaggtctcgatatcatcaggatcgatatatagaactgcttgaccagtccatgtggtgtgagagagtctttaaccttaa |
22355031 |
T |
|
| Q |
223 |
tacagagggaccct |
236 |
Q |
| |
|
| |||||||||| |
|
|
| T |
22355030 |
ccctgagggaccct |
22355017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 6 - 240
Target Start/End: Original strand, 39055512 - 39055746
Alignment:
| Q |
6 |
gtttggtgtttgtggaattcctggttgtgtttgcaggtatggctccaaagaaacccgttaacactggtaaacgcaagaaaggagaaacatctgcaacccg |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
39055512 |
gtttggtgtttgtggaattcctggttgtgtttgcaggtatggctccaaagaaacccgttaacactggtaaacgcaagaaaggagaaacatccgcaacccg |
39055611 |
T |
|
| Q |
106 |
acccccacctagaaaccaagcctttgagagggagagatttaggtctcgctaccatcaagatagatatattgaactacttgaccaatccatgtggtgtgag |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
39055612 |
acccccacctagaaaccaagcctttgagagggagagatttaggtctcgctaccatcaagatagatatattgaactgcttgaccaatccatgtggtgtgag |
39055711 |
T |
|
| Q |
206 |
agggtcttaaacattaatacagagggaccctataa |
240 |
Q |
| |
|
|||||||| ||| ||||| | |||||||||||||| |
|
|
| T |
39055712 |
agggtctttaaccttaatcccgagggaccctataa |
39055746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 201
Target Start/End: Complemental strand, 41295478 - 41295304
Alignment:
| Q |
26 |
ctggttgtgtttgcaggtatggctccaaagaaacccgttaacactggtaaacgcaagaaaggagaaacatctgcaacccgacccccacctagaaaccaag |
125 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| ||||| || ||| | ||||| || |||||||| | | | ||||||||| | ||||||| | |
|
|
| T |
41295478 |
ctggttgt-tttgcaggcatggctccaaagaaacctaccaacaccggaaaaagaaagaagggtgaaacatccgtacctcgacccccatcccgaaaccagg |
41295380 |
T |
|
| Q |
126 |
cctttgagagggagagatttaggtctcgctaccatcaagatagatatattgaactacttgaccaatccatgtggtg |
201 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||| || ||||| || ||||| |||||||||||||||||||| |
|
|
| T |
41295379 |
cctttgagagggagagatttaggtctcgatatcatcaggacagatacatagaactgcttgaccaatccatgtggtg |
41295304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 171
Target Start/End: Complemental strand, 45020173 - 45020025
Alignment:
| Q |
23 |
ttcctggttgtgtttgcaggtatggctccaaagaaacccgttaacactggtaaacgcaagaaaggagaaacatctgcaacccgacccccacctagaaacc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| || || || || ||| | |||||||| |||||||| || | | ||||||||||||||||| |
|
|
| T |
45020173 |
ttcctggttgtgtttgcaggtatggctcctaagaaacctgtgaataccggaaaaaggaagaaaggtgaaacatccacatctcaacccccacctagaaacc |
45020074 |
T |
|
| Q |
123 |
aagcctttgagagggagagatttaggtctcgctaccatcaagatagata |
171 |
Q |
| |
|
|| | ||||| |||||||||| ||||| ||||| ||||| ||||| |
|
|
| T |
45020073 |
aaccatttgatcatgagagatttaaatctcgttaccaccaagacagata |
45020025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 6 - 240
Target Start/End: Original strand, 8009156 - 8009390
Alignment:
| Q |
6 |
gtttggtgtttgtggaattcctggttgtgtttgcaggtatggctccaaagaaacccgttaacactggtaaacgcaagaaaggagaaacatctgcaacccg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8009156 |
gtttggtgtttgtggaattcctggttgtgtttgcaggtatggctccaaagaaacccattaacactggtaaacgcaagaaaggagaaacatccgcaacccg |
8009255 |
T |
|
| Q |
106 |
acccccacctagaaaccaagcctttgagagggagagatttaggtctcgctaccatcaagatagatatattgaactacttgaccaatccatgtggtgtgag |
205 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8009256 |
acccacacctagaaaccaagcctttgagagggagagatttaggtctcgctaccatcaagatagatatattgaactgcttgaccaatccatgtggtgtgag |
8009355 |
T |
|
| Q |
206 |
agggtcttaaacattaatacagagggaccctataa |
240 |
Q |
| |
|
|||||||| ||| ||||| | |||||||||||||| |
|
|
| T |
8009356 |
agggtctttaaccttaatcccgagggaccctataa |
8009390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1795 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: scaffold1795
Description:
Target: scaffold1795; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 23 - 240
Target Start/End: Original strand, 1120 - 1336
Alignment:
| Q |
23 |
ttcctggttgtgtttgcaggtatggctccaaagaaacccgttaacactggtaaacgcaagaaaggagaaacatctgcaacccgacccccacctagaaacc |
122 |
Q |
| |
|
||||||||||| |||||||||||||| || |||||||| ||||| |||||| | ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1120 |
ttcctggttgt-tttgcaggtatggcacccaagaaacctacaaacaccggtaaaagaaagaaaggagaaacatccgcaacccgacccccacctagaaacc |
1218 |
T |
|
| Q |
123 |
aagcctttgagagggagagatttaggtctcgctaccatcaagatagatatattgaactacttgaccaatccatgtggtgtgagagggtcttaaacattaa |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
1219 |
aagcctttgagagggagagatttaggtctcgctaccatcaagatagatatattgaactgcttgaccaatccatgtggtgtgagagggtctttaaccttaa |
1318 |
T |
|
| Q |
223 |
tacagagggaccctataa |
240 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
1319 |
ccccgagggaccctataa |
1336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 131; Significance: 4e-68; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 26 - 240
Target Start/End: Complemental strand, 34653214 - 34653001
Alignment:
| Q |
26 |
ctggttgtgtttgcaggtatggctccaaagaaacccgttaacactggtaaacgcaagaaaggagaaacatctgcaacccgacccccacctagaaaccaag |
125 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| ||||| || ||| | ||||| || |||||||| |||| |||||||||| |||||||||||| |
|
|
| T |
34653214 |
ctggttgt-tttgcaggcatggctccaaagaaacctaccaacaccggaaaaagaaagaagggtgaaacatccgcaaaccgacccccagctagaaaccaag |
34653116 |
T |
|
| Q |
126 |
cctttgagagggagagatttaggtctcgctaccatcaagatagatatattgaactacttgaccaatccatgtggtgtgagagggtcttaaacattaatac |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||| | |
|
|
| T |
34653115 |
cctttgagagggagagatttaggtctcgctaccatcaagatagatatattgaactgcttgaccaatccatgtggtgtgagagggtctttaaccttaatcc |
34653016 |
T |
|
| Q |
226 |
agagggaccctataa |
240 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
34653015 |
cgagggaccctataa |
34653001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 23 - 171
Target Start/End: Original strand, 4022469 - 4022617
Alignment:
| Q |
23 |
ttcctggttgtgtttgcaggtatggctccaaagaaacccgttaacactggtaaacgcaagaaaggagaaacatctgcaacccgacccccacctagaaacc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| || || || ||| | |||||||| |||||||| || | | ||||||||||||||||| |
|
|
| T |
4022469 |
ttcctggttgtgtttgcaggtatggctcctaagaaacccgtgaataccggcaaaaggaagaaaggtgaaacatccacatctcaacccccacctagaaacc |
4022568 |
T |
|
| Q |
123 |
aagcctttgagagggagagatttaggtctcgctaccatcaagatagata |
171 |
Q |
| |
|
|| | ||||| | |||||||||| ||||| ||||| ||||| ||||| |
|
|
| T |
4022569 |
aaccatttgaccgagagagatttaaatctcgttaccaccaagacagata |
4022617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 23 - 171
Target Start/End: Original strand, 4714370 - 4714518
Alignment:
| Q |
23 |
ttcctggttgtgtttgcaggtatggctccaaagaaacccgttaacactggtaaacgcaagaaaggagaaacatctgcaacccgacccccacctagaaacc |
122 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||| || || || ||| | |||||||| |||||||| || ||| ||||||||||||||||| |
|
|
| T |
4714370 |
ttcctggttgtgtttgcaggtatggcacccaagaaacccgtgaataccggaaaaagaaagaaaggtgaaacatccacatcccaacccccacctagaaacc |
4714469 |
T |
|
| Q |
123 |
aagcctttgagagggagagatttaggtctcgctaccatcaagatagata |
171 |
Q |
| |
|
|| | ||||| | |||||||||| ||||| ||||| ||||| ||||| |
|
|
| T |
4714470 |
aaccatttgaccgagagagatttaaatctcgttaccaccaagacagata |
4714518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 23 - 171
Target Start/End: Original strand, 4734176 - 4734324
Alignment:
| Q |
23 |
ttcctggttgtgtttgcaggtatggctccaaagaaacccgttaacactggtaaacgcaagaaaggagaaacatctgcaacccgacccccacctagaaacc |
122 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||| || || || ||| | |||||||| |||||||| || ||| ||||||||||||||||| |
|
|
| T |
4734176 |
ttcctggttgtgtttgcaggtatggcacccaagaaacccgtgaataccggaaaaagaaagaaaggtgaaacatccacatcccaacccccacctagaaacc |
4734275 |
T |
|
| Q |
123 |
aagcctttgagagggagagatttaggtctcgctaccatcaagatagata |
171 |
Q |
| |
|
|| | ||||| | |||||||||| ||||| ||||| ||||| ||||| |
|
|
| T |
4734276 |
aaccatttgaccgagagagatttaaatctcgttaccaccaagacagata |
4734324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 35 - 207
Target Start/End: Original strand, 7321 - 7493
Alignment:
| Q |
35 |
tttgcaggtatggctccaaagaaacccgttaacactggtaaacgcaagaaaggagaaacatctgcaacccgacccccacctagaaaccaagcctttgaga |
134 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||| ||| ||||||| |||||||||| |||| ||||||| | |
|
|
| T |
7321 |
tttgcaggtatggcttcaaagaaacccgtcaacaccggtaaacgcaagaaaggagaaacatccgcaccccgacctccacctagaagccaaacctttgaaa |
7420 |
T |
|
| Q |
135 |
gggagagatttaggtctcgctaccatcaagatagatatattgaactacttgaccaatccatgtggtgtgagag |
207 |
Q |
| |
|
|||||||||||||||||| ||| || | ||||||||||||||| | ||| |||| ||||||||||| ||||| |
|
|
| T |
7421 |
gggagagatttaggtctcaatactattaggatagatatattgaattgcttaaccagtccatgtggtgcgagag |
7493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0510 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0510
Description:
Target: scaffold0510; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 201
Target Start/End: Original strand, 11142 - 11316
Alignment:
| Q |
26 |
ctggttgtgtttgcaggtatggctccaaagaaacccgttaacactggtaaacgcaagaaaggagaaacatctgcaacccgacccccacctagaaaccaag |
125 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| ||||| || ||| | ||||| || |||||||| | | | ||||||||| | ||||||| | |
|
|
| T |
11142 |
ctggttgt-tttgcaggcatggctccaaagaaacctaccaacaccggaaaaagaaagaagggtgaaacatccgtacctcgacccccatcccgaaaccagg |
11240 |
T |
|
| Q |
126 |
cctttgagagggagagatttaggtctcgctaccatcaagatagatatattgaactacttgaccaatccatgtggtg |
201 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||| || ||||| || ||||| |||||||||||||||||||| |
|
|
| T |
11241 |
cctttgagagggagagatttaggtctcgatatcatcaggacagatacatagaactgcttgaccaatccatgtggtg |
11316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 171
Target Start/End: Original strand, 34837084 - 34837232
Alignment:
| Q |
23 |
ttcctggttgtgtttgcaggtatggctccaaagaaacccgttaacactggtaaacgcaagaaaggagaaacatctgcaacccgacccccacctagaaacc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| || || || ||| | |||||||| |||||||| ||| | | ||||||||||||||||| |
|
|
| T |
34837084 |
ttcctggttgtgtttgcaggtatggctcctaagaaacccgtgaataccggcaaaaggaagaaaggtgaaacatccgcatctcaacccccacctagaaacc |
34837183 |
T |
|
| Q |
123 |
aagcctttgagagggagagatttaggtctcgctaccatcaagatagata |
171 |
Q |
| |
|
|| | ||||| | |||||||||| ||||| ||||| ||||| ||||| |
|
|
| T |
34837184 |
aaccatttgaccgagagagatttaaatctcgttaccaccaagacagata |
34837232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 23 - 171
Target Start/End: Complemental strand, 2161990 - 2161842
Alignment:
| Q |
23 |
ttcctggttgtgtttgcaggtatggctccaaagaaacccgttaacactggtaaacgcaagaaaggagaaacatctgcaacccgacccccacctagaaacc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| || || || ||| | |||||||| |||||||| || | | ||||||||||||||||| |
|
|
| T |
2161990 |
ttcctggttgtgtttgcaggtatggctcctaagaaacccgtgaataccggcaaaaggaagaaaggtgaaacatccacatctcaacccccacctagaaacc |
2161891 |
T |
|
| Q |
123 |
aagcctttgagagggagagatttaggtctcgctaccatcaagatagata |
171 |
Q |
| |
|
|| | ||||| | |||||||||| ||||| ||||| ||||| ||||| |
|
|
| T |
2161890 |
aaccatttgaccgagagagatttaaatctcgttaccaccaagacagata |
2161842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 171
Target Start/End: Original strand, 9572811 - 9572959
Alignment:
| Q |
23 |
ttcctggttgtgtttgcaggtatggctccaaagaaacccgttaacactggtaaacgcaagaaaggagaaacatctgcaacccgacccccacctagaaacc |
122 |
Q |
| |
|
||||||||| |||||| |||||||||||| ||||||||||| || || || ||| | |||||||| |||||||| || | | ||||||||| ||||||| |
|
|
| T |
9572811 |
ttcctggttatgtttgtaggtatggctcctaagaaacccgtgaataccggcaaaaggaagaaaggtgaaacatccacatctcaacccccaccaagaaacc |
9572910 |
T |
|
| Q |
123 |
aagcctttgagagggagagatttaggtctcgctaccatcaagatagata |
171 |
Q |
| |
|
|| | ||||| | |||||||||| ||||| ||||| ||||| ||||| |
|
|
| T |
9572911 |
aaccatttgaccgtgagagatttaaatctcgttaccaccaagacagata |
9572959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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