View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_329 (Length: 240)
Name: NF10261A_low_329
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_329 |
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Alignment Details
Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 75 - 222
Target Start/End: Original strand, 30576494 - 30576641
Alignment:
| Q |
75 |
attaacaaatctcaattcctccctatccttccattctcctatttatacacgcaactcaataattaatcaattaagtaactcctccttatactataatgtt |
174 |
Q |
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| T |
30576494 |
attaacaaatctcaattcctccctatacttccattctcctatttatacacgcaactcaataactaatcaattaagtaactcctccttatactataatgtt |
30576593 |
T |
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| Q |
175 |
acttacttcttacctttagtcctaacaaacacctccttatgctatatt |
222 |
Q |
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| T |
30576594 |
acttacttcttacctttaatcctaacaaacacctccttattctatatt |
30576641 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 163
Target Start/End: Complemental strand, 38760569 - 38760503
Alignment:
| Q |
97 |
ctatccttccattctcctatttatacacgcaactcaataattaatcaattaagtaactcctccttat |
163 |
Q |
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| T |
38760569 |
ctatccttctattctcctatttatacatgctactctataactaatcaattaactaactcctctttat |
38760503 |
T |
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