View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261A_low_344 (Length: 235)

Name: NF10261A_low_344
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261A_low_344
NF10261A_low_344
[»] chr7 (9 HSPs)
chr7 (14-224)||(33902202-33902412)
chr7 (27-135)||(24211326-24211434)
chr7 (27-165)||(46603696-46603832)
chr7 (27-120)||(9603484-9603577)
chr7 (27-120)||(9831055-9831148)
chr7 (38-120)||(4040862-4040948)
chr7 (64-124)||(45996484-45996544)
chr7 (91-135)||(3399435-3399479)
chr7 (34-106)||(30003801-30003873)
[»] scaffold0192 (1 HSPs)
scaffold0192 (27-165)||(13360-13498)
[»] chr8 (6 HSPs)
chr8 (27-165)||(25267030-25267168)
chr8 (27-137)||(2233868-2233978)
chr8 (27-135)||(32162764-32162870)
chr8 (27-134)||(39907939-39908046)
chr8 (73-134)||(17072689-17072750)
chr8 (73-134)||(17575521-17575582)
[»] chr3 (16 HSPs)
chr3 (27-164)||(41242179-41242316)
chr3 (27-124)||(16041133-16041230)
chr3 (27-124)||(16053073-16053170)
chr3 (27-165)||(11076939-11077076)
chr3 (27-124)||(16037577-16037674)
chr3 (35-135)||(17517888-17517988)
chr3 (38-164)||(37820798-37820924)
chr3 (27-124)||(39933347-39933443)
chr3 (30-129)||(9821003-9821102)
chr3 (27-135)||(28389387-28389501)
chr3 (27-170)||(31229723-31229866)
chr3 (27-131)||(5050593-5050697)
chr3 (98-135)||(34730789-34730826)
chr3 (47-135)||(50744732-50744820)
chr3 (98-135)||(34870135-34870172)
chr3 (26-82)||(6276753-6276809)
[»] chr6 (6 HSPs)
chr6 (27-135)||(12185707-12185815)
chr6 (27-134)||(9456209-9456316)
chr6 (27-135)||(3441218-3441326)
chr6 (27-135)||(10068183-10068289)
chr6 (43-135)||(25070402-25070494)
chr6 (26-75)||(10483415-10483464)
[»] chr4 (8 HSPs)
chr4 (27-134)||(3067606-3067713)
chr4 (27-134)||(5050426-5050533)
chr4 (35-123)||(4059118-4059206)
chr4 (61-133)||(31040283-31040356)
chr4 (44-135)||(43967986-43968077)
chr4 (27-129)||(18371146-18371248)
chr4 (61-131)||(36622116-36622186)
chr4 (27-135)||(45891795-45891904)
[»] chr1 (7 HSPs)
chr1 (27-135)||(25808484-25808592)
chr1 (27-163)||(46298512-46298648)
chr1 (27-135)||(31501054-31501162)
chr1 (52-134)||(19339915-19339997)
chr1 (28-135)||(49423341-49423448)
chr1 (27-135)||(23392714-23392823)
chr1 (27-106)||(51540737-51540817)
[»] chr2 (4 HSPs)
chr2 (27-130)||(2126184-2126287)
chr2 (45-134)||(11152190-11152279)
chr2 (70-132)||(22348730-22348792)
chr2 (61-132)||(22345686-22345757)
[»] chr5 (5 HSPs)
chr5 (27-133)||(35075847-35075954)
chr5 (39-124)||(31559096-31559181)
chr5 (82-135)||(5150835-5150888)
chr5 (28-135)||(10020725-10020829)
chr5 (27-88)||(7802030-7802090)
[»] scaffold0402 (1 HSPs)
scaffold0402 (52-134)||(2978-3060)
[»] scaffold1786 (1 HSPs)
scaffold1786 (27-135)||(365-473)


Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 33902202 - 33902412
Alignment:
Q  14 ccaataatatccgaaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaata 113  Q
    |||| ||||| |||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||| ||| ||||||    
T  33902202 ccaaaaatattcgaaaaatggaattaaattataaattatgtcttgaaaagataagattttaaatttctaaaatattaaatgcataattttcaataaaata 33902301  T
Q  114 tttttatctttaatttcttaacctttgctttcaggacataagttagcatttctcattgtattcttatatggtgtgttgaaataaatccaagtagaatcaa 213  Q
    ||| |||||||||||| ||||| ||||| |||||| |||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||    
T  33902302 tttctatctttaattttttaacttttgccttcagggcataagttagcatttctcattggattcttgtatggtgtgttgaaataaatgcaagtagaatcaa 33902401  T
Q  214 ctttttgatgt 224  Q
    |||||||||||    
T  33902402 ctttttgatgt 33902412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 27 - 135
Target Start/End: Original strand, 24211326 - 24211434
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 126  Q
    |||||| ||||||||||||||||||||| |||| ||||| | ||||  |||||||  |||||||||| || ||||||||||||||||||| ||||||| |    
T  24211326 aaaaatagaattaaatcataaattatgttttgaaaagattagatttccaatttcttgaatattgaatacacaatttccaacaaaatatttctatctttga 24211425  T
Q  127 tttcttaac 135  Q
    |||||||||    
T  24211426 tttcttaac 24211434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 27 - 165
Target Start/End: Complemental strand, 46603832 - 46603696
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 126  Q
    |||||||||||||||  |||||||  ||||||| ||||||| ||||||||||||||||| ||  |||||| ||||||||| ||||  ||| ||||||||     
T  46603832 aaaaatggaattaaaatataaatt--gtcttgaaaagataagattttaaatttctaaaacatgaaatgcacaatttccaataaaaagtttctatctttag 46603735  T
Q  127 tttcttaacctttgctttcaggacataagttagcatttc 165  Q
    ||||||||| ||||| || ||| || |||||||||||||    
T  46603734 tttcttaacttttgccttaagggcacaagttagcatttc 46603696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 9603577 - 9603484
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttat 120  Q
    |||||| |||||||| |||||||  ||| |||| ||||||| ||||||||||||||||| ||  |||||||||||| ||| |||||||||||||    
T  9603577 aaaaatagaattaaaacataaatattgttttgaaaagataagattttaaatttctaaaacatgaaatgcataattttcaataaaatatttttat 9603484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 9831148 - 9831055
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttat 120  Q
    |||||| |||||||| |||||||  ||| |||| ||||||| ||||||||||||||||| ||  |||||||||||| ||| |||||||||||||    
T  9831148 aaaaatagaattaaaacataaatattgttttgaaaagataagattttaaatttctaaaacatgaaatgcataattttcaataaaatatttttat 9831055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 120
Target Start/End: Complemental strand, 4040948 - 4040862
Alignment:
Q  38 taaatcataaattatgtcttgataagataaaattttaaatttctaaaat----attgaatgcataatttccaacaaaatatttttat 120  Q
    ||||||||||||| |||||||| ||||||| |||||||| ||||| |||    |||||||||| ||||||||||||||| |||||||    
T  4040948 taaatcataaattttgtcttgaaaagataatattttaaaattctagaatattgattgaatgcacaatttccaacaaaatgtttttat 4040862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 45996544 - 45996484
Alignment:
Q  64 ataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttt 124  Q
    |||||||||||||||| || |||||| ||| || ||||| ||| |||||||||||||||||    
T  45996544 ataaaattttaaatttttagaatattaaatacacaatttacaataaaatatttttatcttt 45996484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 3399435 - 3399479
Alignment:
Q  91 aatgcataatttccaacaaaatatttttatctttaatttcttaac 135  Q
    |||||| |||||||||||||| | |||||| ||||||||||||||    
T  3399435 aatgcaaaatttccaacaaaaaacttttatatttaatttcttaac 3399479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 30003873 - 30003801
Alignment:
Q  34 gaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaa 106  Q
    |||||||| |||||||| ||| |||| || ||||  |||||| ||| ||| ||||||||| ||||||||||||    
T  30003873 gaattaaaacataaattttgtattgaaaaaataagtttttaactttttaagatattgaatacataatttccaa 30003801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 165
Target Start/End: Complemental strand, 13498 - 13360
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 126  Q
    ||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||| ||||||||||||||| ||| |||||||      
T  13498 aaaaatgcaattaaatcataaattatgtcttgaaaagataagattttaaatttctagaatattgaatgcacaatttccaacaaaatgtttctatctttgc 13399  T
Q  127 tttcttaacctttgctttcaggacataagttagcatttc 165  Q
    ||||||||| | ||| || || ||| |||||| ||||||    
T  13398 tttcttaacttgtgccttgagaacacaagttaacatttc 13360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 165
Target Start/End: Original strand, 25267030 - 25267168
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 126  Q
    ||||||||||||||||||||||||||||||||| | ||||| |||||||||||||| ||||| ||||||| ||||||||||||||| ||| |||||||      
T  25267030 aaaaatggaattaaatcataaattatgtcttgaaatgataagattttaaatttctataatatcgaatgcacaatttccaacaaaatgtttctatctttgg 25267129  T
Q  127 tttcttaacctttgctttcaggacataagttagcatttc 165  Q
    ||||||||| | |||||| ||| || |||||| ||||||    
T  25267130 tttcttaacttatgctttgagggcagaagttaacatttc 25267168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 27 - 137
Target Start/End: Original strand, 2233868 - 2233978
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 126  Q
    |||||| ||||||||||||||||| ||| |||| ||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||      
T  2233868 aaaaatagaattaaatcataaattttgttttgaaaagataaaattttaaatttttagaatattgaatgcataatttccaacaaaatacttttatctttgg 2233967  T
Q  127 tttcttaacct 137  Q
    ||| |||||||    
T  2233968 ttttttaacct 2233978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 135
Target Start/End: Complemental strand, 32162870 - 32162764
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 126  Q
    |||||||||||||||||||||||| | | |||| || |||| |||||| ||||||||||||||| || || || ||| |||||||| ||||||| ||| |    
T  32162870 aaaaatggaattaaatcataaattttattttgaaaatataagattttacatttctaaaatattg-atacacaa-ttcgaacaaaatgtttttatttttga 32162773  T
Q  127 tttcttaac 135  Q
    |||||||||    
T  32162772 tttcttaac 32162764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 134
Target Start/End: Complemental strand, 39908046 - 39907939
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 126  Q
    ||||||| ||||||| |||||||| | | || | ||||||| ||||||||||||||||||||  |||||||||| | | | ||||||||| ||||||||     
T  39908046 aaaaatgaaattaaaacataaattttattttaaaaagataacattttaaatttctaaaatatgaaatgcataatattctataaaatatttatatctttag 39907947  T
Q  127 tttcttaa 134  Q
    ||| ||||    
T  39907946 ttttttaa 39907939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 17072750 - 17072689
Alignment:
Q  73 taaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaa 134  Q
    |||||||||| ||||||||||||| |||   ||||||||||||||||||||| |||||||||    
T  17072750 taaatttctagaatattgaatgcacaatccacaacaaaatatttttatctttgatttcttaa 17072689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 17575521 - 17575582
Alignment:
Q  73 taaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaa 134  Q
    |||||||||| ||||||||||||| |||   ||||||||||||||||||||| |||||||||    
T  17575521 taaatttctagaatattgaatgcacaatccacaacaaaatatttttatctttgatttcttaa 17575582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 27 - 164
Target Start/End: Original strand, 41242179 - 41242316
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 126  Q
    |||||| |||||||||||||||||||||| ||| ||||||| |||| |||||||||||||||| |||||| ||||||||||||||| |||||||||||      
T  41242179 aaaaatagaattaaatcataaattatgtcctgaaaagataagatttcaaatttctaaaatattaaatgcacaatttccaacaaaatgtttttatctttgg 41242278  T
Q  127 tttcttaacctttgctttcaggacataagttagcattt 164  Q
    ||||||||| | ||| || ||| ||||||||| |||||    
T  41242279 tttcttaacttgtgccttgagggcataagttaacattt 41242316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 16041230 - 16041133
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttt 124  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||| |||||||| |||||| ||| |||||||    
T  16041230 aaaaatggaattaaatcataaattatgtcttgaaaagataagattttaaatttctagaatattgaatgcacaatttccatcaaaatgtttctatcttt 16041133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 16053170 - 16053073
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttt 124  Q
    |||| |||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||| ||||||||||||||| ||| |||||||    
T  16053170 aaaattggaattaaatcataaattatgtcttgaaaagataagattttaaatttctagaatattgaatgcacaatttccaacaaaatgtttctatcttt 16053073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 27 - 165
Target Start/End: Original strand, 11076939 - 11077076
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 126  Q
    ||||||||||||||| |||||||| |||||||| || |||| ||||||||||||||||||||||| |||| |||||||||| |||| ||| ||||||| |    
T  11076939 aaaaatggaattaaaacataaattttgtcttgaaaatataagattttaaatttctaaaatattgattgcacaatttccaac-aaatgtttctatctttga 11077037  T
Q  127 tttcttaacctttgctttcaggacataagttagcatttc 165  Q
    ||||||||| | ||| || | |||| |||||||||||||    
T  11077038 tttcttaacttgtgccttaacgacacaagttagcatttc 11077076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 16037674 - 16037577
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttt 124  Q
    |||||||||||||||||| |||||||||||||| ||||||| |||||||||||||| ||||||||||||| |||||||| |||||| ||| |||||||    
T  16037674 aaaaatggaattaaatcacaaattatgtcttgaaaagataagattttaaatttctagaatattgaatgcacaatttccatcaaaatgtttctatcttt 16037577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 35 - 135
Target Start/End: Original strand, 17517888 - 17517988
Alignment:
Q  35 aattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaa 134  Q
    |||||||||||||||||| |||||| ||||||| | ||||||||| || ||||||||||||| |||||| |||||||||||| ||||||| |||||||||    
T  17517888 aattaaatcataaattatatcttgaaaagataagaatttaaatttttagaatattgaatgcacaatttctaacaaaatatttctatctttgatttcttaa 17517987  T
Q  135 c 135  Q
    |    
T  17517988 c 17517988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 164
Target Start/End: Original strand, 37820798 - 37820924
Alignment:
Q  38 taaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaacct 137  Q
    |||| |||||||  |||||| | ||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||||| |||| ||| ||||| |    
T  37820798 taaaacataaatattgtcttaaaaagataagattttaaatttctaaaacatggaatgcataatttccaataaaatatttttatatttagtttattaactt 37820897  T
Q  138 ttgctttcaggacataagttagcattt 164  Q
     || ||| ||| ||||||||| |||||    
T  37820898 gtgttttaagggcataagttaacattt 37820924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 39933443 - 39933347
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttt 124  Q
    |||||| ||||||||||||||||| ||| |||| |||||||||||| |||||| || ||||||||||||| ||||| ||||||||  |||||||||||    
T  39933443 aaaaatagaattaaatcataaattgtgttttgaaaagataaaattt-aaatttttagaatattgaatgcacaattttcaacaaaaattttttatcttt 39933347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 9821003 - 9821102
Alignment:
Q  30 aatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaattt 129  Q
    ||||||||| ||| ||||||||||| |||| ||||||| |||| ||||||  | ||| ||||||||| |||||| |||||||||||| ||||||||||||    
T  9821003 aatggaattgaattataaattatgttttgaaaagataagatttaaaattttcagaatcttgaatgcacaatttctaacaaaatatttctatctttaattt 9821102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 135
Target Start/End: Complemental strand, 28389501 - 28389387
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaattt------ctaaaatattgaatgcataatttccaacaaaatatttttat 120  Q
    |||||| ||||||||||||||||||| |||||| ||||||| |||||||||||      ||| || ||| |||| | |||||||||||||||||||||||    
T  28389501 aaaaatagaattaaatcataaattatatcttgaaaagataatattttaaatttataggactagaacattaaatgtacaatttccaacaaaatatttttat 28389402  T
Q  121 ctttaatttcttaac 135  Q
    ||||  |||||||||    
T  28389401 ctttggtttcttaac 28389387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 170
Target Start/End: Original strand, 31229723 - 31229866
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 126  Q
    |||||| ||| |||| |||||||||| |||||| |  |||| ||||||||||||||||| || ||||| | ||||||||| ||||| ||| ||| | |||    
T  31229723 aaaaatagaagtaaaacataaattatatcttgaaatcataagattttaaatttctaaaacatagaatgtacaatttccaataaaatgtttctatatgtaa 31229822  T
Q  127 tttcttaacctttgctttcaggacataagttagcatttctcatt 170  Q
    | ||||||| | |||||| ||| || || ||| |||||| ||||    
T  31229823 tctcttaacttatgctttaagggcacaaattaacatttcccatt 31229866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 5050593 - 5050697
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 126  Q
    |||||||||||||||   ||| || ||| |||| |||| |||||||||||||| ||| |||||||||||| |||||  || ||||||||| ||| |||||    
T  5050593 aaaaatggaattaaaatgtaacttttgtattgaaaagacaaaattttaaatttttaatatattgaatgcacaatttttaagaaaatatttctatgtttaa 5050692  T
Q  127 tttct 131  Q
     ||||    
T  5050693 cttct 5050697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 34730789 - 34730826
Alignment:
Q  98 aatttccaacaaaatatttttatctttaatttcttaac 135  Q
    |||||||||||||||||||||||||||| |||||||||    
T  34730789 aatttccaacaaaatatttttatctttagtttcttaac 34730826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 135
Target Start/End: Original strand, 50744732 - 50744820
Alignment:
Q  47 aattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaac 135  Q
    |||| ||||| || ||| ||| ||||||||||| ||||||||  |||||| |||||  || ||||||||| |||||||| |||||||||    
T  50744732 aattttgtctagagaagttaagattttaaatttttaaaatatgaaatgcacaatttttaataaaatatttatatctttagtttcttaac 50744820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 34870135 - 34870172
Alignment:
Q  98 aatttccaacaaaatatttttatctttaatttcttaac 135  Q
    |||||||||||||||||||||||||||  |||||||||    
T  34870135 aatttccaacaaaatatttttatctttggtttcttaac 34870172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 6276809 - 6276753
Alignment:
Q  26 gaaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttcta 82  Q
    |||||||  |||||||| |||||||||||||||| || |||| |||| |||||||||    
T  6276809 gaaaaatataattaaattataaattatgtcttgaaaatataagatttaaaatttcta 6276753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 135
Target Start/End: Original strand, 12185707 - 12185815
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 126  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| ||||||||||||| ||||| ||||||||||||| ||| ||||     
T  12185707 aaaaatggaattaaatcataaattatgtcttgaaaagataagattttgaatttctagaatattgaatgcacaattttcaacaaaatatttctatttttag 12185806  T
Q  127 tttcttaac 135  Q
    |||||||||    
T  12185807 tttcttaac 12185815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 27 - 134
Target Start/End: Original strand, 9456209 - 9456316
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 126  Q
    |||||||||||||||| |||||||||||||||| || |||| |||||||||||||| | ||||||||||| ||||||||||||||||||| ||||||| |    
T  9456209 aaaaatggaattaaattataaattatgtcttgaaaatataagattttaaatttctagactattgaatgcacaatttccaacaaaatatttctatctttga 9456308  T
Q  127 tttcttaa 134  Q
    ||||||||    
T  9456309 tttcttaa 9456316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 135
Target Start/End: Original strand, 3441218 - 3441326
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 126  Q
    ||||||| ||||||| |||||||| | |||||| || |||| |||||||| |||||||||||  |||||| ||||||| | ||||| ||| |||||||||    
T  3441218 aaaaatgaaattaaaacataaattttatcttgaaaatataagattttaaagttctaaaatatgaaatgcacaatttcctataaaatgtttctatctttaa 3441317  T
Q  127 tttcttaac 135  Q
    ||| |||||    
T  3441318 ttttttaac 3441326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 135
Target Start/End: Complemental strand, 10068289 - 10068183
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 126  Q
    ||||||| ||||||| |||||||| |||||||| |  |||||||||||||||||||||| ||  |||||| ||  ||||| ||||||||| ||| ||||     
T  10068289 aaaaatgaaattaaaacataaattttgtcttgacagaataaaattttaaatttctaaaacatgaaatgcacaa--tccaataaaatatttctatatttag 10068192  T
Q  127 tttcttaac 135  Q
    |||||||||    
T  10068191 tttcttaac 10068183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 135
Target Start/End: Original strand, 25070402 - 25070494
Alignment:
Q  43 cataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaac 135  Q
    |||||||| |||||| | ||||||| ||||||||||||||||||||  ||| || |||||  || ||||| ||| |||||||| ||| |||||    
T  25070402 cataaattttgtcttcaaaagataagattttaaatttctaaaatatgaaatacacaatttttaataaaatgtttatatctttagttttttaac 25070494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 10483415 - 10483464
Alignment:
Q  26 gaaaaatggaattaaatcataaattatgtcttgataagataaaattttaa 75  Q
    |||||||||||||||| |||||||| |||||||| || |||| |||||||    
T  10483415 gaaaaatggaattaaaacataaattttgtcttgaaaatataagattttaa 10483464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 27 - 134
Target Start/End: Original strand, 3067606 - 3067713
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 126  Q
    ||||||| |||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||      
T  3067606 aaaaatgaaattaaatcataaattatttcttgaaaagataagattttaaatttctaaaatattgaatgcacaatttccaacaaaatgtttctatctttgg 3067705  T
Q  127 tttcttaa 134  Q
    ||||||||    
T  3067706 tttcttaa 3067713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 27 - 134
Target Start/End: Complemental strand, 5050533 - 5050426
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 126  Q
    |||||| |||||||||||||||||||| ||  | ||||||| ||||||||||||||||||||| |||||| ||||| ||| ||||| |||||||||||      
T  5050533 aaaaatagaattaaatcataaattatgcctcaagaagataagattttaaatttctaaaatattaaatgcacaattttcaataaaatgtttttatctttgg 5050434  T
Q  127 tttcttaa 134  Q
    ||||||||    
T  5050433 tttcttaa 5050426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 123
Target Start/End: Original strand, 4059118 - 4059206
Alignment:
Q  35 aattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctt 123  Q
    ||||||| |||||||| |||||||| ||||||||||||||||||||||||||||  ||| || |||||| || ||||| ||||||||||    
T  4059118 aattaaaacataaattttgtcttgaaaagataaaattttaaatttctaaaatataaaatacacaatttctaataaaatgtttttatctt 4059206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 133
Target Start/End: Complemental strand, 31040356 - 31040283
Alignment:
Q  61 aagataaaattttaaatttctaaaatattga-atgcataatttccaacaaaatatttttatctttaatttctta 133  Q
    ||||||| ||||||||||||||||| ||| | ||||||||||||||| ||||||||||||| ||||||||||||    
T  31040356 aagataagattttaaatttctaaaacattaatatgcataatttccaataaaatatttttatatttaatttctta 31040283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 44 - 135
Target Start/End: Original strand, 43967986 - 43968077
Alignment:
Q  44 ataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaac 135  Q
    |||||||||||||||| ||||||| |||| |||||| || |||||| |||||| ||||| ||||||||| ||| |||||||  |||||||||    
T  43967986 ataaattatgtcttgaaaagataagatttaaaatttttagaatattaaatgcacaattttcaacaaaatgtttctatctttggtttcttaac 43968077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 18371248 - 18371146
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 126  Q
    ||||| |||||||||  ||||||| | |||| | || |||| |||||||| ||||||||||| ||||||| ||||||| | ||||||||| |||||||||    
T  18371248 aaaaaaggaattaaaatataaattttatcttaaaaatataagattttaaagttctaaaatatagaatgcacaatttcctataaaatatttctatctttaa 18371149  T
Q  127 ttt 129  Q
    |||    
T  18371148 ttt 18371146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 36622116 - 36622186
Alignment:
Q  61 aagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttct 131  Q
    ||||||||||||||||||| ||| |||||||||||| ||||||||| ||||| ||| ||| |||| |||||    
T  36622116 aagataaaattttaaatttttaatatattgaatgcacaatttccaaaaaaatgtttatatgtttactttct 36622186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 135
Target Start/End: Complemental strand, 45891904 - 45891795
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtctt-gataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttta 125  Q
    |||||| |||||||||||||| || |||||| || || |||| ||||||||||| ||  | |||||||||| ||| ||||||||||| ||| || ||||     
T  45891904 aaaaatagaattaaatcataatttttgtctttgaaaaaataagattttaaatttttaggacattgaatgcacaatctccaacaaaatgtttctaactttg 45891805  T
Q  126 atttcttaac 135  Q
     |||||||||    
T  45891804 gtttcttaac 45891795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 27 - 135
Target Start/End: Original strand, 25808484 - 25808592
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 126  Q
    |||||||||||||||||||||||  |||||| | ||||||||||||||||||| ||||||||||||| || |||||| ||||||||||||||||||||      
T  25808484 aaaaatggaattaaatcataaatgttgtcttcaaaagataaaattttaaatttttaaaatattgaatacacaatttctaacaaaatatttttatctttgg 25808583  T
Q  127 tttcttaac 135  Q
    |||||||||    
T  25808584 tttcttaac 25808592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 163
Target Start/End: Complemental strand, 46298648 - 46298512
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 126  Q
    |||||| |||||||| |||||||  |||||||| ||||||| |||||||||||||| ||||||||||  | ||||||||||||||| |||||||||||      
T  46298648 aaaaatagaattaaaacataaatgttgtcttgaaaagataagattttaaatttctataatattgaatatacaatttccaacaaaatgtttttatctttgg 46298549  T
Q  127 tttcttaacctttgctttcaggacataagttagcatt 163  Q
    ||||||||| | ||  || ||||||||||||||||||    
T  46298548 tttcttaacttgtgtcttaaggacataagttagcatt 46298512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 135
Target Start/End: Original strand, 31501054 - 31501162
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 126  Q
    ||||||| ||||||||||||| || ||| |||| ||||||| |||||||||||||| || ||| |||||| |||||||||||| || ||| ||||||| |    
T  31501054 aaaaatgaaattaaatcataatttttgttttgaaaagataagattttaaatttctagaacattaaatgcacaatttccaacaatatgtttctatctttga 31501153  T
Q  127 tttcttaac 135  Q
    ||| |||||    
T  31501154 ttttttaac 31501162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 134
Target Start/End: Complemental strand, 19339997 - 19339915
Alignment:
Q  52 tgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaa 134  Q
    |||||||| ||||||| | |||||| ||||||||||||||||||| ||||||||||||||| ||| |||||||  ||||||||    
T  19339997 tgtcttgaaaagataagactttaaagttctaaaatattgaatgcacaatttccaacaaaatgtttatatctttggtttcttaa 19339915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 49423448 - 49423341
Alignment:
Q  28 aaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaat 127  Q
    ||||| |||||||| |||||||  | |||| | ||||||| ||||||||||| ||||| ||  |||||| ||||| ||| ||||||||||||| ||||||    
T  49423448 aaaatagaattaaaacataaatattatcttaaaaagataagattttaaatttttaaaacatgaaatgcacaattttcaataaaatatttttatgtttaat 49423349  T
Q  128 ttcttaac 135  Q
    || |||||    
T  49423348 ttattaac 49423341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 135
Target Start/End: Original strand, 23392714 - 23392823
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtcttgataagataaaatttt-aaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttta 125  Q
    |||||||||||||||  ||||||| | |||| | || |||| ||||| ||| || ||||||||| |||||| |||||  || |||||||||  || ||||    
T  23392714 aaaaatggaattaaaaaataaattttatcttaaaaatataagatttttaaaattttaaaatattaaatgcacaattttaaataaaatatttcaattttta 23392813  T
Q  126 atttcttaac 135  Q
    ||||||||||    
T  23392814 atttcttaac 23392823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 51540817 - 51540737
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaa-tttctaaaatattgaatgcataatttccaa 106  Q
    ||||||||||||||| ||||| || || ||| | || ||||||||||||| ||| ||||||| ||||| || |||||||||    
T  51540817 aaaaatggaattaaaacataagttttgacttaacaaaataaaattttaaactttttaaaataatgaatacacaatttccaa 51540737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 130
Target Start/End: Original strand, 2126184 - 2126287
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 126  Q
    ||||||||||||||||||||||| ||||||||| || ||||  |||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||     
T  2126184 aaaaatggaattaaatcataaatcatgtcttgaaaatataagtttttaaatttttaaaatattgaatgcacaatttccaacaaaatatttctatctttag 2126283  T
Q  127 tttc 130  Q
    ||||    
T  2126284 tttc 2126287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 134
Target Start/End: Complemental strand, 11152279 - 11152190
Alignment:
Q  45 taaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaa 134  Q
    ||||||||||||||| ||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||| |||||| |||||||||    
T  11152279 taaattatgtcttgagaagataagattttaaatttctagaatattgaatgcacaatttccaacaaaatattttcatctttgatttcttaa 11152190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 22348730 - 22348792
Alignment:
Q  70 ttttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttctt 132  Q
    ||||||| || |||||||||||||||| ||||| ||| ||||||||||||| |||| ||||||    
T  22348730 ttttaaacttttaaaatattgaatgcacaattttcaagaaaatatttttatatttagtttctt 22348792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 22345686 - 22345757
Alignment:
Q  61 aagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttctt 132  Q
    |||||||| |||||||| | |||||||||||||||| |||||| || |||||| ||  || |||||||||||    
T  22345686 aagataaatttttaaatgtttaaaatattgaatgcacaatttcaaagaaaatacttaaatatttaatttctt 22345757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 35075954 - 35075847
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaac-aaaatatttttatcttta 125  Q
    |||||| |||||||||||||| || |||||||| ||||||| |||||||||||||| ||||||||||||| ||||| |||| ||||| ||| ||||||||    
T  35075954 aaaaatagaattaaatcataatttttgtcttgaaaagataagattttaaatttctagaatattgaatgcacaattttcaacaaaaatgtttatatcttta 35075855  T
Q  126 atttctta 133  Q
     |||||||    
T  35075854 gtttctta 35075847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 31559096 - 31559181
Alignment:
Q  39 aaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttt 124  Q
    |||| |||||||||||||||| || ||||||||||||||| |||||||| | |||||| ||| ||||||||||| ||| |||||||    
T  31559096 aaataataaattatgtcttgaaaacataaaattttaaattgctaaaatactaaatgcacaatgtccaacaaaatgtttctatcttt 31559181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 5150888 - 5150835
Alignment:
Q  82 aaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaac 135  Q
    ||||||||||||||||||||| ||| |||||||||| |||||||  ||||||||    
T  5150888 aaaatattgaatgcataattttcaagaaaatattttaatctttagcttcttaac 5150835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 10020829 - 10020725
Alignment:
Q  28 aaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaat 127  Q
    |||||||||||||| || ||||  |||||||| || ||||| |||||||||||||||| || ||||| |  |||||   |||||||||| ||| ||||||    
T  10020829 aaaatggaattaaaacaaaaatattgtcttgaaaatataaatttttaaatttctaaaacatagaatgaacgatttc---caaaatatttctatatttaat 10020733  T
Q  128 ttcttaac 135  Q
    || |||||    
T  10020732 ttattaac 10020725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 7802090 - 7802030
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatat 88  Q
    |||||||||||||||    ||||| |||||| | ||||||||||||||||||||||||||||    
T  7802090 aaaaatggaattaaaatgcaaattttgtcttaa-aagataaaattttaaatttctaaaatat 7802030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0402 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 134
Target Start/End: Complemental strand, 3060 - 2978
Alignment:
Q  52 tgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaa 134  Q
    |||||||| ||||||| | |||||| ||||||||||||||||||| ||||||||||||||| ||| |||||||  ||||||||    
T  3060 tgtcttgaaaagataagactttaaagttctaaaatattgaatgcacaatttccaacaaaatgtttatatctttggtttcttaa 2978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1786 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1786
Description:

Target: scaffold1786; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 135
Target Start/End: Complemental strand, 473 - 365
Alignment:
Q  27 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 126  Q
    ||||||| |||||||  ||||||| | |||| | || |||| |||||||| || ||||||||| |||||| |||||  ||||||||||||  || |||||    
T  473 aaaaatgaaattaaaaaataaattttatcttaaaaatataagattttaaaattttaaaatattaaatgcacaattttgaacaaaatatttcaatttttaa 374  T
Q  127 tttcttaac 135  Q
    | |||||||    
T  373 tatcttaac 365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University