View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_35 (Length: 420)
Name: NF10261A_low_35
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 11 - 414
Target Start/End: Complemental strand, 4236321 - 4235918
Alignment:
| Q |
11 |
gatgaaacagtggttgaaggtgaacaatttcgtaacttcacacacgtagagaggttggcgaaagttgagaaaatatctgtgatggcaaagtcttctcctt |
110 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| | |
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| T |
4236321 |
gatgaaacagtggttgaaggcgaacaatttcgtaacttcacacacgaagagaggttggcgaaagttgagaaaatctctgtgatggcaagatcttctccat |
4236222 |
T |
|
| Q |
111 |
ttgataaacttctaatagtacaatgcttaaaacaaaaaggtcatgtagttgctgtaactggagatggaacaaacgatgcaccggcattgaaagaagctga |
210 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
4236221 |
ttgataaacttctaatggtacaatgcttaaaacaaaaaggtcatgtagttgctgtaaccggagacggaacaaacgatgcaccagcattgaaagaagctga |
4236122 |
T |
|
| Q |
211 |
tattggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatattagatgacaattttgcatctatagtaacagttata |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4236121 |
tattggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatattagatgacaattttgcatctattgtaacagttata |
4236022 |
T |
|
| Q |
311 |
aattggggaagatgtgtttacaacaacattcaaaaattcattcaatttcagttaacagtgaatgtggcagcacttgttataaattttgtcgcggcggttt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4236021 |
aattggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaacagtgaatgtggcagcacttgttataaattttgtcgcggcggttt |
4235922 |
T |
|
| Q |
411 |
cagc |
414 |
Q |
| |
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|||| |
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|
| T |
4235921 |
cagc |
4235918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 257
Target Start/End: Original strand, 30441333 - 30441396
Alignment:
| Q |
194 |
gcattgaaagaagctgatattggactttcaatgggaattcaaggtactgaagtagcaaaagaga |
257 |
Q |
| |
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||||||| |||||||| ||||||| |||| ||||||||||||||||| ||||| |||||||||| |
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| T |
30441333 |
gcattgatagaagctggtattggaatttccatgggaattcaaggtaccgaagttgcaaaagaga |
30441396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 10 - 414
Target Start/End: Complemental strand, 6185446 - 6185042
Alignment:
| Q |
10 |
agatgaaacagtggttgaaggtgaacaatttcgtaacttcacacacgtagagaggttggcgaaagttgagaaaatatctgtgatggcaaagtcttctcct |
109 |
Q |
| |
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||||||||| ||||||||||| ||||||||||| ||||| || |||| |||||| || | || ||||| ||||||| ||||||||||| || ||||| |
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| T |
6185446 |
agatgaaacggtggttgaaggcgaacaatttcgcaactttacgcacgaagagagattagaaaaggttgaaaaaatatgtgtgatggcaagatcatctcca |
6185347 |
T |
|
| Q |
110 |
tttgataaacttctaatagtacaatgcttaaaacaaaaaggtcatgtagttgctgtaactggagatggaacaaacgatgcaccggcattgaaagaagctg |
209 |
Q |
| |
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||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
6185346 |
tttgacaaacttctaatggttcaatgcttaaaacaaaaaggtcatgtagttgctgtaacaggagatggaacaaacgatgcaccggcattgaaagaagccg |
6185247 |
T |
|
| Q |
210 |
atattggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatattagatgacaattttgcatctatagtaacagttat |
309 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
6185246 |
atatcggactttcaatgggaattcaaggtactgaagttgcaaaagagagttcagatattgttatattagatgacaattttgcatctatcgtaacagtgtt |
6185147 |
T |
|
| Q |
310 |
aaattggggaagatgtgtttacaacaacattcaaaaattcattcaatttcagttaacagtgaatgtggcagcacttgttataaattttgtcgcggcggtt |
409 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||| || ||||||||| |
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| T |
6185146 |
aaactggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaactaacagtgaatgtggcagcccttgttatcaatttcgttgcggcggtt |
6185047 |
T |
|
| Q |
410 |
tcagc |
414 |
Q |
| |
|
||||| |
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|
| T |
6185046 |
tcagc |
6185042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 176 - 395
Target Start/End: Complemental strand, 19593039 - 19592829
Alignment:
| Q |
176 |
ggaacaaacgatgcaccggcattgaaagaagctgatattggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatat |
275 |
Q |
| |
|
|||| ||| |||||| | ||| ||||||||||| |||||| |||||| |||| |||||||||||| ||||| ||||||||||| |||||||||||||||| |
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| T |
19593039 |
ggaagaaatgatgcatcagcactgaaagaagctaatattgaactttccatggaaattcaaggtaccgaagttgcaaaagagagctcagatattgttatat |
19592940 |
T |
|
| Q |
276 |
tagatgacaattttgcatctatagtaacagttataaattggggaagatgtgtttacaacaacattcaaaaattcattcaatttcagttaacagtgaatgt |
375 |
Q |
| |
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||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
19592939 |
tagatgacaattttgcatctatagtaacaattttaaattggggaagatgtgtttacaacaacattcaaaaattcattcaatt---------agtgaatgt |
19592849 |
T |
|
| Q |
376 |
ggcagcacttgttataaatt |
395 |
Q |
| |
|
||||||||||||||| |||| |
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|
| T |
19592848 |
ggcagcacttgttatcaatt |
19592829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 131 - 393
Target Start/End: Complemental strand, 38357145 - 38356883
Alignment:
| Q |
131 |
caatgcttaaaacaaaaaggtcatgtagttgctgtaactggagatggaacaaacgatgcaccggcattgaaagaagctgatattggactttcaatgggaa |
230 |
Q |
| |
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|||||||||| | | ||||||||||||||||| || || || || || |||||||||||||| || || |||||||||||||| |||||||| ||||||| |
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| T |
38357145 |
caatgcttaagaaagaaaggtcatgtagttgcggtcacaggcgacggcacaaacgatgcacctgccttaaaagaagctgatataggactttctatgggaa |
38357046 |
T |
|
| Q |
231 |
ttcaaggtactgaagtagcaaaagagagttcagatattgttatattagatgacaattttgcatctatagtaacagttataaattggggaagatgtgttta |
330 |
Q |
| |
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| ||||| || ||||| || ||||| ||||| ||||| || || ||||| ||||| || ||| | | ||| ||| ||| ||||||||||||||||| |
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| T |
38357045 |
tccaaggaaccgaagtcgccaaagaaagttccgatatcgtcatcttagacgacaacttcaattctgttgcaactgttttaaggtggggaagatgtgttta |
38356946 |
T |
|
| Q |
331 |
caacaacattcaaaaattcattcaatttcagttaacagtgaatgtggcagcacttgttataaa |
393 |
Q |
| |
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||||||||| || ||||| ||||| ||||| ||||||||||||| ||||||||||| ||||| |
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|
| T |
38356945 |
caacaacatccagaaatttattcagtttcaactaacagtgaatgttgcagcacttgtgataaa |
38356883 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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