View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_356 (Length: 231)
Name: NF10261A_low_356
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_356 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0079 (1 HSPs) |
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| [»] scaffold0384 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 41075324 - 41075548
Alignment:
| Q |
7 |
gttatgatgaatggggcgaagatgaagactggatcgacaatgatgaggcaagtttttatggacatctcaacaaagcatgtggccttacagcaatgatttt |
106 |
Q |
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| T |
41075324 |
gttatgatgaatggggcgaagatgaagactggatcgacaatgatgaggcaagtttttctggacatctcaacaaagcatgtggccttacagcaatgatttt |
41075423 |
T |
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| Q |
107 |
aatattcacaaatttagtttctatgtgcatatatgaattctttattatcaatcactaaacctgcaggatgagttagtgttatgacgaaaggtgggataaa |
206 |
Q |
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| T |
41075424 |
gatattcacaaatttagtttctatgtgcatatatgaattctttattatcaatcactaaacctgcaggatgagttattgttatgacgaaaggtgggataaa |
41075523 |
T |
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| Q |
207 |
tgttttcacgttggtaagctcccag |
231 |
Q |
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| T |
41075524 |
tgttttcacgttggtaagctcccag |
41075548 |
T |
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Target: scaffold0079 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0079
Description:
Target: scaffold0079; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 41 - 231
Target Start/End: Complemental strand, 6314 - 6124
Alignment:
| Q |
41 |
cgacaatgatgaggcaagtttttat-ggacatctcaacaaagcatgtggccttacagcaatgattttaatattcacaaatttagtttctatgtgcatata |
139 |
Q |
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| T |
6314 |
cgacaatgatgaggcaagttttttttggacatctcaacaaagtttgtggccttacatcaatgattttgatattcacaaatttagtttctatgtgcatata |
6215 |
T |
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| Q |
140 |
tgaattctttattatcaatcactaaacctgcaggatgagttagtgttatgacgaaaggtgggataaatgttttcacgttggtaagctcccag |
231 |
Q |
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| T |
6214 |
tgaattctttatcatcaatctctaaacctgcagaaggatgcagag-tatgaagaaaggtgggagaaatgttttcacgttggtaagctcccag |
6124 |
T |
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Target: scaffold0384 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: scaffold0384
Description:
Target: scaffold0384; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 41 - 231
Target Start/End: Complemental strand, 3752 - 3563
Alignment:
| Q |
41 |
cgacaatgatgaggcaagtttttatggacatctcaacaaagcatgtggccttacagcaatgattttaatattcacaaatttagtttctatgtgcatatat |
140 |
Q |
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| T |
3752 |
cgacaatgatgaggcaagtttttttggacatctcaacaaagtttgtggccttacatcaatgattttgatattcacaaatttagtttctatgtgcatatat |
3653 |
T |
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| Q |
141 |
gaattctttattatcaatcactaaacctgcaggatgagttagtgttatgacgaaaggtgggataaatgttttcacgttggtaagctcccag |
231 |
Q |
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| T |
3652 |
gaattctttatcatcaatctctaaacctgcagaaggatgcagag-tataaagaaaggtgggagaaatgttttcacgtgggtaagctcccag |
3563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 177
Target Start/End: Original strand, 4382918 - 4382986
Alignment:
| Q |
111 |
ttcacaaatttagtttctatgtgcatatatgaattctttatt--atcaatcactaaacctgcaggatga |
177 |
Q |
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| T |
4382918 |
ttcacaaattcagtttctatgtgcatatttgaattctttaatacatcaatctctaaaccaacaggatga |
4382986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 4524971 - 4524915
Alignment:
| Q |
111 |
ttcacaaatttagtttctatgtgcatatatgaattctttattatcaatcactaaacc |
167 |
Q |
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| T |
4524971 |
ttcacaaatttagtttctttatgcatatatgaattatttaatatcattctctaaacc |
4524915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 444722 - 444783
Alignment:
| Q |
111 |
ttcacaaatttagtttctatgtgcatatatgaattctttattatcaatcactaaacctgcag |
172 |
Q |
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| T |
444722 |
ttcacaaatttattgtttgtgtgcatatttgaattctttaatatcaatctctaaacctgcag |
444783 |
T |
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