View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_362 (Length: 230)
Name: NF10261A_low_362
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_362 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 40062897 - 40062678
Alignment:
| Q |
1 |
acctaaatcttcaccttttaggccaacctgtatcaatagaattaactccattaacaatcaatctccattaagactaataaatagtctttgatcaa----- |
95 |
Q |
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| T |
40062897 |
acctaaatcttcaccttttaggccaacctgtatcaatagaattaactccattaacaatcaatctccattaagactaataaatagtctttgatcaagtctt |
40062798 |
T |
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| Q |
96 |
-------aagttaagactgacctgatatgtccacttctgagaggagagatcaagagtgttgttgccattcttcaaacctttcaatgtcactggaccggtg |
188 |
Q |
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| T |
40062797 |
tgatcaaaagttaagactgacctgatatgtccacttctgagaggagagatcaagagtgttgttgccattcttcaaacctttcaatgttactggaccggtg |
40062698 |
T |
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| Q |
189 |
atccccgctccccatgtgtc |
208 |
Q |
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| T |
40062697 |
atccccgctccccatctgtc |
40062678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 40093528 - 40093330
Alignment:
| Q |
1 |
acctaaatcttcaccttttaggccaacctgtatcaatagaattaactccattaacaatcaatctccattaagactaataaatagtctttgatcaaaagtt |
100 |
Q |
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| T |
40093528 |
acctaaatcttcaccttttaggccaacctgtatcaaaagaattaactccattaactatg---------taagactaacaaatagtcttcgatcaaaagtg |
40093438 |
T |
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| Q |
101 |
aagactgacctgatatgtccacttctgagaggagagatcaagagtgttgttgccattcttcaaacctttcaatgtcactggaccggtgatccccgctccc |
200 |
Q |
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| T |
40093437 |
aagactgacctgatatgtccacttccgagaggagagatcaagagtcttgttgccattcttcaaacctttcaatatcactggaccggtgatccccgctccc |
40093338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 40081247 - 40081035
Alignment:
| Q |
1 |
acctaaatcttcaccttttaggccaacctgtatcaatagaattaactccattaacaatcaatctccattaa-------------gactaataaatagtct |
87 |
Q |
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|||||||||||| ||||||||||||| ||||||| | | ||||||||||||||||||| || |||||||| || ||||||||||| | |
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| T |
40081247 |
acctaaatcttcgccttttaggccaatctgtatcgaaaaaattaactccattaacaatgtat-tccattaaagtgataaagaaagaataataaatagttt |
40081149 |
T |
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| Q |
88 |
ttgatcaaaagtt-aagactgacctgatatgtccacttctgagaggagagatcaagagtgttgttgccattcttcaaacctttcaatgtcactggaccgg |
186 |
Q |
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| |||||||| || |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
40081148 |
tcgatcaaaaatttaagattgacctgatatgtccacttccgagaggagagatcaagagtgttgttgccattcttcaaacctttcaatatcacgggaccgg |
40081049 |
T |
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| Q |
187 |
tgatccccgctccc |
200 |
Q |
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||||||| |||||| |
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| T |
40081048 |
tgatccctgctccc |
40081035 |
T |
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