View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_369 (Length: 230)
Name: NF10261A_low_369
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_369 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 44912539 - 44912310
Alignment:
| Q |
1 |
ttttaccaaaatgttcaatcaaatagatcttactatctgaatgcttctctgatcttagtttatattcaactactcacagcccctttagtcgttcaggaag |
100 |
Q |
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| T |
44912539 |
ttttaccgaaatgttcaatcaaatagatcttactatctgaatgcttctctgatcttagtttatattcaactactcacagcccctttagtcgttcaggaag |
44912440 |
T |
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| Q |
101 |
acaggaaccatttcatcttttgaaaaaagcaattcaatcattttaatatatttataaatcatcagatagtctccaacagtcaaacctaagaaacctatag |
200 |
Q |
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| T |
44912439 |
acaggaaccatttcatcttttgaaaaaagcaattcaatcattttaatatatttataaatgatcagatagtctccaacagtcaaacctaagaaacctatag |
44912340 |
T |
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| Q |
201 |
atatataacttctatcaaatttgtttttga |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
44912339 |
atatataacttctatcaaatttgtttttga |
44912310 |
T |
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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 33376926 - 33376974
Alignment:
| Q |
2 |
tttaccaaaatgttcaatcaaatagatcttactatctgaatgcttctct |
50 |
Q |
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| T |
33376926 |
tttaccaaaatgttcaatcaaatagattttactatctgaatgcttctct |
33376974 |
T |
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