View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261A_low_373 (Length: 230)

Name: NF10261A_low_373
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261A_low_373
NF10261A_low_373
[»] chr1 (2 HSPs)
chr1 (7-124)||(34589936-34590053)
chr1 (123-223)||(34589790-34589890)


Alignment Details
Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 7 - 124
Target Start/End: Complemental strand, 34590053 - 34589936
Alignment:
Q  7 gtaactcgtcaattgtcatcgtagttgcatcattcaattcttctattgagaaaacaacataattaaatctttatgttaaagatcttagaatcttttcaac 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34590053 gtaactcgtcaattgtcatcgtagttgcatcattcaattcttctattgagaaaacaacataattaaatctttatgttaaagatcttagaatcttttcaac 34589954  T
Q  107 agtggttacatgggtcaa 124  Q
    | |||||| |||||||||    
T  34589953 aatggttatatgggtcaa 34589936  T

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Target: chr1; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 34589890 - 34589790
Alignment:
Q  123 aagtattcctttagagattcatcaatcttcatgctaagattctcaaattcttcgcatagagctcgaagttgatctctcttcaccttattagaacattgat 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34589890 aagtattcctttagagattcatcaatcttcatgctaagattctcaaattcttcgcatagagctcgaagttgatctctcttcaccttattagaacattgat 34589791  T
Q  223 a 223  Q
    |    
T  34589790 a 34589790  T

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