View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_376 (Length: 230)
Name: NF10261A_low_376
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_376 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 26978673 - 26978444
Alignment:
| Q |
1 |
tgtgtggaaaaatattatgaaagatttttctattgtgtgagtaaaactaaaaacactaatctaatttatgagcgtaatacaaaatgctaatttttacata |
100 |
Q |
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| T |
26978673 |
tgtgtggaaaaatattatgaaagatttttctattgtgtgagtacaactaaaaacactaatctaatttatgagcgtaatacaaaatgctaatttttacata |
26978574 |
T |
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| Q |
101 |
atatgtgcctacaacaataattacttattacagcaacatgatgtatgtgagtttgtttagcatacttgtgatgccaatgtagcccaagcagccccagcaa |
200 |
Q |
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| T |
26978573 |
atatgtgcctacaacaataattacttattacagcaacatgatgtatgtgagtttgtttagcatacttgtgatgccaatgtagcccaagcagccccagcaa |
26978474 |
T |
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| Q |
201 |
tcccatagcctaaatatctgcacagaatga |
230 |
Q |
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| T |
26978473 |
tcccatagcctaaatatctgcacagaatga |
26978444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 134 - 228
Target Start/End: Original strand, 27003704 - 27003798
Alignment:
| Q |
134 |
caacatgatgtatgtgagtttgtttagcatacttgtgatgccaatgtagcccaagcagccccagcaatcccatagcctaaatatctgcacagaat |
228 |
Q |
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| T |
27003704 |
caacataatgcatatgagtttgttcggcatacttgggatgccaatgtagcccatgcagccccagcaatcccatagcctaagtatctgcacagaat |
27003798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 93 - 228
Target Start/End: Original strand, 26989069 - 26989202
Alignment:
| Q |
93 |
tttacataatatgtgcctacaacaataattacttattacagcaacatgatgtatgtgagtttgtttagcatacttgtgatgccaatgtagcccaagcagc |
192 |
Q |
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| T |
26989069 |
tttacatagtatgtgcctacaaccctaattacttgttta--caacgtaatgcatataagtttgttcggcatacttgggatgccaatgtagcccatgcagc |
26989166 |
T |
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| Q |
193 |
cccagcaatcccatagcctaaatatctgcacagaat |
228 |
Q |
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| T |
26989167 |
cccagcaatcccatagtttaaatatctgcacagaat |
26989202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 26944151 - 26944206
Alignment:
| Q |
161 |
catacttgtgatgccaatgtagcccaagcagccccagcaatcccatagcctaaata |
216 |
Q |
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| T |
26944151 |
catacttgcgatgccattgtggcccatgcagcccctgcaattccatagcctaaata |
26944206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 129
Target Start/End: Original strand, 2258493 - 2258528
Alignment:
| Q |
94 |
ttacataatatgtgcctacaacaataattacttatt |
129 |
Q |
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| T |
2258493 |
ttacataatatgtgcctacaacaataattacttatt |
2258528 |
T |
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