View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_377 (Length: 230)
Name: NF10261A_low_377
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_377 |
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Alignment Details
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 34173749 - 34173689
Alignment:
| Q |
168 |
cacattacaacacattaacagccttcctgtttgggggtcttgttgcaggggataatttttt |
228 |
Q |
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| T |
34173749 |
cacattataacactttaaccgccttcctggttgggggtcttgttgaaggggataatttttt |
34173689 |
T |
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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 34004508 - 34004546
Alignment:
| Q |
9 |
aataagattaattttggtaatagtaataaatgttatata |
47 |
Q |
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| T |
34004508 |
aataagattaattttggtaatagtaataaatgttatata |
34004546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 34158189 - 34158151
Alignment:
| Q |
9 |
aataagattaattttggtaatagtaataaatgttatata |
47 |
Q |
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| T |
34158189 |
aataagattaattttggtaatagtaataaatgttatata |
34158151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 34173908 - 34173843
Alignment:
| Q |
9 |
aataagattaattttggtaatagtaataaatgttatatannnnnnngagtagtttaatgtatagtc |
74 |
Q |
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| T |
34173908 |
aataagattaaatttggtaatagtaataaatgttatatatttttttgactagtttaatgtatagtc |
34173843 |
T |
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