View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_38 (Length: 417)
Name: NF10261A_low_38
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 38869617 - 38869215
Alignment:
| Q |
1 |
tcaggaagattatggaagacgtccaaaacttcagtattttctctctcnnnnnnnnnncttt-------ctaaaattattttccattgaatgttgtctatc |
93 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
38869617 |
tcaggaagattatggaagacgtccaaaacttcagtattttctctctctttttttttttttttttttttctaaaattattttccattgaatgttgtctatc |
38869518 |
T |
|
| Q |
94 |
ttctcattgaatctgttttctgtttttgatgcacttcaaatatatgatcaatgacgtttctgcattgtgattttaaatgataagaacgaatttgaatgct |
193 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38869517 |
ttctcgttgaatctgttttctgtttttgatgcacttcaaatatatgatcaatg-cgtttctgcattatgattttaaatgataagaacgaatttgaatgct |
38869419 |
T |
|
| Q |
194 |
aagtacaaaatatttgttcattcattattttaaatttggggtgttggagttaaataatttatggtaagcatattcacctgatttgttaccttctttttta |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38869418 |
aagtacaaaatatttgttcattcattattttaaatttggggtgttggagttaaataatttatggtaagcatattcacctgatttgttaccttctttttta |
38869319 |
T |
|
| Q |
294 |
taatggctactcattgcaatatatcttaggcaactcgcatatgacatggaaagagcgcaaaaaggttgaagataggaaggttgtttcccttggtgggaag |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38869318 |
taatggctactcattgcaatatatcttaggcaactcgcatatgacatggaaagagcgcaaaaaggttgaagataggaaggttgtttcccttggtgggaag |
38869219 |
T |
|
| Q |
394 |
gtga |
397 |
Q |
| |
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|||| |
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| T |
38869218 |
gtga |
38869215 |
T |
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