View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10261A_low_381 (Length: 229)
Name: NF10261A_low_381
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_381 |
 | |
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| [»] scaffold0023 (1 HSPs) |
| |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr6 (3 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0144 (1 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0337 (1 HSPs) |
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| [»] scaffold0553 (1 HSPs) |
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| [»] scaffold0455 (1 HSPs) |
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| [»] scaffold0661 (1 HSPs) |
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Alignment Details
Target: scaffold0023 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 127697 - 127469
Alignment:
| Q |
1 |
tcaaggctgcaaacactagaacaaaaaataattatcccaatagtcagctgatgcggtccgttgtcaacaagtacacaccagcttgctttgcatttattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
127697 |
tcaaggctgcaaacactagaacaaaaaataattatcccaatagtcagctgatgcggtccgttgtcaacaagtacacaccagcttgctttgcatttattca |
127598 |
T |
|
| Q |
101 |
caggcagtatgacctttccttcaaatactatcatgaggaggacacaacaaaagggtctgcctttaacaagtttttcaaagttttcacaattgaaaaggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
127597 |
caggcagtatgacctttccttcaaatactatcatgaggaggacacaacaaaagggtctgcctttaacaagtttttcaaagttttcacaattgaaaaggtt |
127498 |
T |
|
| Q |
201 |
gatgataattatgatgatgttgataatga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
127497 |
gatgataattatgatgatgttgataatga |
127469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 54755279 - 54755507
Alignment:
| Q |
1 |
tcaaggctgcaaacactagaacaaaaaataattatcccaatagtcagctgatgcggtccgttgtcaacaagtacacaccagcttgctttgcatttattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54755279 |
tcaaggctgcaaacactagaacaaaaaataattatcccaatagtcagctgatgcggtccgttgtcaacaagtacacaccagcttgctttgcatttattca |
54755378 |
T |
|
| Q |
101 |
caggcagtatgacctttccttcaaatactatcatgaggaggacacaacaaaagggtctgcctttaacaagtttttcaaagttttcacaattgaaaaggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54755379 |
caggcagtatgacctttccttcaaatactatcatgaggaggacacaacaaaagggtctgcctttaacaagtttttcaaagttttcacaattgaaaaggtt |
54755478 |
T |
|
| Q |
201 |
gatgataattatgatgatgttgataatga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
54755479 |
gatgataattatgatgatgttgataatga |
54755507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 44349900 - 44349672
Alignment:
| Q |
1 |
tcaaggctgcaaacactagaacaaaaaataattatcccaatagtcagctgatgcggtccgttgtcaacaagtacacaccagcttgctttgcatttattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44349900 |
tcaaggctgcaaacactagaacaaaaaataattatcccaatagtcagctgatgcggtccgttgtcaacaagtacacaccagcttgctttgcatttattca |
44349801 |
T |
|
| Q |
101 |
caggcagtatgacctttccttcaaatactatcatgaggaggacacaacaaaagggtctgcctttaacaagtttttcaaagttttcacaattgaaaaggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44349800 |
caggcagtatgacctttccttcaaatactatcatgaggaggacacaacaaaagggtctgcctttaacaagtttttcaaagttttcacaattgaaaaggtt |
44349701 |
T |
|
| Q |
201 |
gatgataattatgatgatgttgataatga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
44349700 |
gatgataattatgatgatgttgataatga |
44349672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 21174920 - 21174692
Alignment:
| Q |
1 |
tcaaggctgcaaacactagaacaaaaaataattatcccaatagtcagctgatgcggtccgttgtcaacaagtacacaccagcttgctttgcatttattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21174920 |
tcaaggctgcaaacactagaacaaaaaataattatcccaatagtcagctgatgcggtccgttgtaaacaagtacacaccagcttgctttgcatttattca |
21174821 |
T |
|
| Q |
101 |
caggcagtatgacctttccttcaaatactatcatgaggaggacacaacaaaagggtctgcctttaacaagtttttcaaagttttcacaattgaaaaggtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21174820 |
taggcagtatgacctttccttcaaatactatcatgaggaggacacaacaaaagggtctgcctttaacaagtttttcaaagttttcacaattgaaaaggtt |
21174721 |
T |
|
| Q |
201 |
gatgataattatgatgatgttgataatga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
21174720 |
gatgataattatgatgatgttgataatga |
21174692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 28121893 - 28122121
Alignment:
| Q |
1 |
tcaaggctgcaaacactagaacaaaaaataattatcccaatagtcagctgatgcggtccgttgtcaacaagtacacaccagcttgctttgcatttattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28121893 |
tcaaggctgcaaacactagaacaaaaaataattatcccaatagtcagctgatgcggtccgttgtaaacaagtacacaccagcttgctttgcatttattca |
28121992 |
T |
|
| Q |
101 |
caggcagtatgacctttccttcaaatactatcatgaggaggacacaacaaaagggtctgcctttaacaagtttttcaaagttttcacaattgaaaaggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28121993 |
caggcagtatgacctttccttcaaatactatcatgaggaggacacaacaaaagggtctgcctttaacaagtttttcaaagttttcacaattgaaaaggtt |
28122092 |
T |
|
| Q |
201 |
gatgataattatgatgatgttgataatga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
28122093 |
gatgataattatgatgatgttgataatga |
28122121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 22039749 - 22039534
Alignment:
| Q |
1 |
tcaaggctgcaaacactagaacaaaaaataattatcccaatagtcagctgatgcggtccgttgtcaacaagtacacaccagcttgctttgcatttattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
22039749 |
tcaaggctgcaaacactagaacaaaaaataattatcccaatagtcagctgatgcggtccgttgtaaacaagtacacaccagcttgctttgcatttattca |
22039650 |
T |
|
| Q |
101 |
caggcagtatgacctttccttcaaatactatcatgaggaggacacaacaaaagggtctgcctttaacaagtttttcaaagttttcacaattgaaaaggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22039649 |
caggcagtatgacctttccttcaaatactatcatgaggaggacacaacaaaagggtctgcctttaacaagtttttcaaagttttcacaattgaaaaggtt |
22039550 |
T |
|
| Q |
201 |
gatgataattatgatg |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
22039549 |
gatgataattatgatg |
22039534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 34402493 - 34402722
Alignment:
| Q |
1 |
tcaaggctgcaaacactagaacaaaaaataattatcccaatagtcagctgatgcggtccgttgtcaacaagtacacaccagcttgctttgcatttattca |
100 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34402493 |
tcaaggttgcaaacacttcaacaaaaaataattatcccaacagtcagctgatgcggtccgttgtaaacaagtacacaccaacttgctttgcatttattca |
34402592 |
T |
|
| Q |
101 |
caggcagtatgacctttccttcaaatactatcatgaggaggacacaacaaaagggtctgcctttaacaag-tttttcaaagttttcacaattgaaaaggt |
199 |
Q |
| |
|
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34402593 |
cagacagtatgacctttccttcaaatactattatgaggaggacacaacaaaagggtctgccttgaacaagttttttcaaagttttcacaattgaaaaggt |
34402692 |
T |
|
| Q |
200 |
tgatgataattatgatgatgttgataatga |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
34402693 |
tgatgataattatgatgatgttgataatga |
34402722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 17224316 - 17224544
Alignment:
| Q |
1 |
tcaaggctgcaaacactagaacaaaaaataattatcccaatagtcagctgatgcggtccgttgtcaacaagtacacaccagcttgctttgcatttattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
17224316 |
tcaaggctgcaaacactagaacaaaaaataattatcccaacagtcagctgatgcggtccgttgtaaacaagtacacaccagcttgctttgcatttattca |
17224415 |
T |
|
| Q |
101 |
caggcagtatgacctttccttcaaatactatcatgaggaggacacaacaaaagggtctgcctttaacaagtttttcaaagttttcacaattgaaaaggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17224416 |
caggcagtatgacctttccttcaaatactatcatgaggaggacacaacaaaagggtctgcctttaacaagtttttcaaagttttcacaattgaaaaggtt |
17224515 |
T |
|
| Q |
201 |
gatgataattatgatgatgttgataatga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
17224516 |
gatgataattatgatgatgttgataatga |
17224544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 17058800 - 17058572
Alignment:
| Q |
1 |
tcaaggctgcaaacactagaacaaaaaataattatcccaatagtcagctgatgcggtccgttgtcaacaagtacacaccagcttgctttgcatttattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
17058800 |
tcaaggctgcaaacactagaacaaaaaataattatcccaacagtcaactgatgcgatccgttgtaaacaagtacacaccagcttgctttgcatttattca |
17058701 |
T |
|
| Q |
101 |
caggcagtatgacctttccttcaaatactatcatgaggaggacacaacaaaagggtctgcctttaacaagtttttcaaagttttcacaattgaaaaggtt |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17058700 |
caggcagtataacctttccttcaaatactatcatgaggaggacacaacaaaaggttctgcctttaacaagtttttcaaagttttcacaattgaaaaggtt |
17058601 |
T |
|
| Q |
201 |
gatgataattatgatgatgttgataatga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
17058600 |
gatgataattatgatgatgttgataatga |
17058572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 4720137 - 4719909
Alignment:
| Q |
1 |
tcaaggctgcaaacactagaacaaaaaataattatcccaatagtcagctgatgcggtccgttgtcaacaagtacacaccagcttgctttgcatttattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4720137 |
tcaaggctgcaaacactagaacaaaaaataattatcccaatagtcagctgatgcggtccgttgtaaacaagtacacaccagcttgctttgcatttattca |
4720038 |
T |
|
| Q |
101 |
caggcagtatgacctttccttcaaatactatcatgaggaggacacaacaaaagggtctgcctttaacaagtttttcaaagttttcacaattgaaaaggtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4720037 |
caggcagtatgacctttccttcaaatactatcatgaggaggacacaaaaaaagggtctgcctttaacaagtttttcaaagttttcacaattgaaaaggtt |
4719938 |
T |
|
| Q |
201 |
gatgataattatgatgatgttgataatga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
4719937 |
gatgataattatgatgatgttgataatga |
4719909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 10562768 - 10562996
Alignment:
| Q |
1 |
tcaaggctgcaaacactagaacaaaaaataattatcccaatagtcagctgatgcggtccgttgtcaacaagtacacaccagcttgctttgcatttattca |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
10562768 |
tcaagactgcaaacactagaacaaaaaataattatcccaacagtcagctgatgcggtccgttgtaatcaagtacacaccagcttgctttgcatttattca |
10562867 |
T |
|
| Q |
101 |
caggcagtatgacctttccttcaaatactatcatgaggaggacacaacaaaagggtctgcctttaacaagtttttcaaagttttcacaattgaaaaggtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10562868 |
caggcagtatgacctttccttcaaatattattatgaggaggacacatcaaaagggtctgctttgaacaagtttttcaaagttttcacaattgaaaaggtt |
10562967 |
T |
|
| Q |
201 |
gatgataattatgatgatgttgataatga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
10562968 |
gatgataattatgatgatgttgataatga |
10562996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 19844749 - 19844977
Alignment:
| Q |
1 |
tcaaggctgcaaacactagaacaaaaaataattatcccaatagtcagctgatgcggtccgttgtcaacaagtacacaccagcttgctttgcatttattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
19844749 |
tcaaggctgcaaacactagaacaaaaaataattatcccaacagtcagctgatgcggtccgttgaaaacaagtacacaccagcttgctttgcatttattca |
19844848 |
T |
|
| Q |
101 |
caggcagtatgacctttccttcaaatactatcatgaggaggacacaacaaaagggtctgcctttaacaagtttttcaaagttttcacaattgaaaaggtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19844849 |
caggcagtatgacctttccttcaaatactattatgaggaggacacaacaaaagggtctgcctttaacaagtttttcaaagttttcacaattgaaaaggtt |
19844948 |
T |
|
| Q |
201 |
gatgataattatgatgatgttgataatga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
19844949 |
gatgataattatgatgatgttgataatga |
19844977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 29752 - 29980
Alignment:
| Q |
1 |
tcaaggctgcaaacactagaacaaaaaataattatcccaatagtcagctgatgcggtccgttgtcaacaagtacacaccagcttgctttgcatttattca |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
29752 |
tcaaggctgaaaacactagaacaaaaaataattatcccaatagtcagctgatgcggtccgttgtcaacaagtatacaccaacttgctttgcatttattca |
29851 |
T |
|
| Q |
101 |
caggcagtatgacctttccttcaaatactatcatgaggaggacacaacaaaagggtctgcctttaacaagtttttcaaagttttcacaattgaaaaggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29852 |
caggcagtatgacctttccttcaaatactatcatgaggaggacaaaacaaaatggtctgcctttaacaagtttttcaaagttttcacaattgaaaaggtt |
29951 |
T |
|
| Q |
201 |
gatgataattatgatgatgttgataatga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
29952 |
gatgataattatgatgatgttgataatga |
29980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 167316 - 167544
Alignment:
| Q |
1 |
tcaaggctgcaaacactagaacaaaaaataattatcccaatagtcagctgatgcggtccgttgtcaacaagtacacaccagcttgctttgcatttattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
167316 |
tcaaggctgcaaacactagaacaaaaaataattatcccaacagtcagctgatgcggtccgttgtaaacaagtacacaccagcttgctttgcatttattca |
167415 |
T |
|
| Q |
101 |
caggcagtatgacctttccttcaaatactatcatgaggaggacacaacaaaagggtctgcctttaacaagtttttcaaagttttcacaattgaaaaggtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
167416 |
caggcagtatgacctttccttcaaatactattatgaggaggacacaacaaaagggtctgcattgaacaagtttttcaaagttttcacaattgaaaaggtt |
167515 |
T |
|
| Q |
201 |
gatgataattatgatgatgttgataatga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
167516 |
gatgataattatgatgatgttgataatga |
167544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 11973706 - 11973934
Alignment:
| Q |
1 |
tcaaggctgcaaacactagaacaaaaaataattatcccaatagtcagctgatgcggtccgttgtcaacaagtacacaccagcttgctttgcatttattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
11973706 |
tcaaggctgcaaacactagaacaaaaaataattatcccaacagtcagctgatgcggtccgttgtaaacaagtacacaccagcttgttttgcatttattca |
11973805 |
T |
|
| Q |
101 |
caggcagtatgacctttccttcaaatactatcatgaggaggacacaacaaaagggtctgcctttaacaagtttttcaaagttttcacaattgaaaaggtt |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11973806 |
cagacagtatgacctttccttcaaatactatcatgaggaggacacaacaaaagggtctgcctttaacaagtttttcaaagttttcacaattgtaaaggtt |
11973905 |
T |
|
| Q |
201 |
gatgataattatgatgatgttgataatga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
11973906 |
gatgataattatgatgatgttgataatga |
11973934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0337 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0337
Description:
Target: scaffold0337; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 12861 - 13088
Alignment:
| Q |
1 |
tcaaggctgcaaacactagaacaaaaaataattatcccaatagtcagctgatgcggtccgttgtcaacaagtacacaccagcttgctttgcatttattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
12861 |
tcaaggctgcaaacactagaacaaaaaataattatcccaacagtcagctgatgcggtccgttgtaatcaagtacacaccagcttgctttgcatttattca |
12960 |
T |
|
| Q |
101 |
caggcagtatgacctttccttcaaatactatcatgaggaggacacaacaaaagggtctgcctttaacaagtttttcaaagttttcacaattgaaaaggtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
12961 |
caggcagtatgacctttccttcaaatactattatgaggaggacacaacaaaagggtctgccttgaacaagtttttcaaa-ttttcacaattgtaaaggtt |
13059 |
T |
|
| Q |
201 |
gatgataattatgatgatgttgataatga |
229 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
13060 |
aatgataattatgatgatgttgataatga |
13088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0553 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0553
Description:
Target: scaffold0553; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 5381 - 5608
Alignment:
| Q |
1 |
tcaaggctgcaaacactagaacaaaaaataattatcccaatagtcagctgatgcggtccgttgtcaacaagtacacaccagcttgctttgcatttattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
5381 |
tcaaggctgcaaacactagaacaaaaaataattatcccaacagtcagctgatgcggtccgttgtaaacaagtacacaccagctagctttgcatttattca |
5480 |
T |
|
| Q |
101 |
caggcagtatgacctttccttcaaatactatcatgaggaggacacaacaaaagggtctgcctttaacaagtttttcaaagttttcacaattgaaaaggtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||| || |||| |
|
|
| T |
5481 |
caggcagtatgacctttccttcaaatactattatgaggaggacacaagaaaagggtctgccttgaacaagtttttcaaa-ttttcacaattgtaatggtt |
5579 |
T |
|
| Q |
201 |
gatgataattatgatgatgttgataatga |
229 |
Q |
| |
|
||||||||||||||||||| ||||||||| |
|
|
| T |
5580 |
gatgataattatgatgatgctgataatga |
5608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0455 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: scaffold0455
Description:
Target: scaffold0455; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 23 - 229
Target Start/End: Original strand, 1 - 207
Alignment:
| Q |
23 |
aaaaaataattatcccaatagtcagctgatgcggtccgttgtcaacaagtacacaccagcttgctttgcatttattcacaggcagtatgacctttccttc |
122 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1 |
aaaaaataattattccaactgtcagctgatgcggtccgttgtaaacaagtacacatcagcttgctttgcatttattcacaggcagtatgaccttttcttc |
100 |
T |
|
| Q |
123 |
aaatactatcatgaggaggacacaacaaaagggtctgcctttaacaagtttttcaaagttttcacaattgaaaaggttgatgataattatgatgatgttg |
222 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
101 |
aaatactattatgaggaggacacaacaaaagggtctgcctttaacaagtttttcaaagttttcacaattgaaaaggttgatgataattatgatgatgttg |
200 |
T |
|
| Q |
223 |
ataatga |
229 |
Q |
| |
|
||||||| |
|
|
| T |
201 |
ataatga |
207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0661 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0661
Description:
Target: scaffold0661; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 7204 - 7261
Alignment:
| Q |
1 |
tcaaggctgcaaacactagaacaaaaaataattatcccaatagtcagctgatgcggtc |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7204 |
tcaaggctgcaaacactagaacaaaaaataattatcccaacagtcagctgatgcggtc |
7261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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