View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_385 (Length: 229)
Name: NF10261A_low_385
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_385 |
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| [»] scaffold0019 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (4 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 4 - 229
Target Start/End: Original strand, 182340 - 182565
Alignment:
| Q |
4 |
accaacatttaacttcagtggaacacctccggacaaatacataagcagtgtccgccaattgtgacatttgtgagcaagctcgtgaaagtggtgtatgctt |
103 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
182340 |
accaacatttcacttcagtggaacacctccggacaaatacgtaagcagtgtccgccaattgtgacatttgtgagcaagctcgtgaaagtggtgtatgctt |
182439 |
T |
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| Q |
104 |
actagcacattttgggtttttagaataacatgtaaaatatatggtaaattattttaggcagcagaggaatctgatgacatgtcatcttatgtttttgata |
203 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
182440 |
actagcaaatttggggtttttagaataacatgtaaaatatatgggaaattattttaggcagcagaggaatctgatgacatgtcatcttatatttttgata |
182539 |
T |
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| Q |
204 |
acatgcttttcagtttattttagtag |
229 |
Q |
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||||| |||||||||||||||||||| |
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| T |
182540 |
acatgtttttcagtttattttagtag |
182565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 20004010 - 20004234
Alignment:
| Q |
6 |
caacatttaacttcagtggaacacctccggacaaatacataagcagtgtccgccaattgtgacatttgtgagcaagctcgtgaaagtggtgtatgcttac |
105 |
Q |
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|||||||| ||||||||||||||| || | | || |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
20004010 |
caacatttcacttcagtggaacactccctgtcgaacacataagcagagtccgccaattgtgacatttgtgagcaagctcgtgaaagtggtgcatgcttac |
20004109 |
T |
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| Q |
106 |
tagcacattttgggtttttagaataacatgtaaaatatatggtaaattattttaggcagcagaggaatctgatgacatgtcatcttatgtttttgataac |
205 |
Q |
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|||| |||| || |||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| | ||||||||| ||| ||| || | |
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| T |
20004110 |
cagcaaatttgggatttttagaataacatgtaaaatatatgggaaattattctatgcagcagaggaatctgatgataggtcatcttacgttattgttagc |
20004209 |
T |
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| Q |
206 |
atg-cttttcagtttattttagtag |
229 |
Q |
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||| |||||||||||||||||||| |
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| T |
20004210 |
atgatttttcagtttattttagtag |
20004234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 25403568 - 25403686
Alignment:
| Q |
56 |
cgccaattgtgacatttgtgagcaagctcgtgaaagtggtgtatgcttactagcacattttgggtttttagaataacatgtaaaatatatggtaaattat |
155 |
Q |
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|||||||| |||| | ||||||||||||| ||||||||||| |||||||| | || ||| ||||||| | || ||| || || ||||||| ||||||| |
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| T |
25403568 |
cgccaattttgacttctgtgagcaagctcatgaaagtggtgcatgcttaccatcaagtttggggttttcaaaagaacgggtgaagtatatgggaaattat |
25403667 |
T |
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| Q |
156 |
tttaggcagcagaggaatc |
174 |
Q |
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| |||| |||||||||||| |
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| T |
25403668 |
tctaggaagcagaggaatc |
25403686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 24142504 - 24142450
Alignment:
| Q |
175 |
tgatgacatgtcatcttatgtttttgataacatgcttttcagtttattttagtag |
229 |
Q |
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|||||||||||||||||||||| || || |||| |||||||||||||||||||| |
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| T |
24142504 |
tgatgacatgtcatcttatgttattcttagcatgtttttcagtttattttagtag |
24142450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 25196708 - 25196654
Alignment:
| Q |
175 |
tgatgacatgtcatcttatgtttttgataacatgcttttcagtttattttagtag |
229 |
Q |
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|||||||||||||||||||||| || ||||||| |||||||||||||||||||| |
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| T |
25196708 |
tgatgacatgtcatcttatgttattcttaacatgtttttcagtttattttagtag |
25196654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 174
Target Start/End: Complemental strand, 28924385 - 28924269
Alignment:
| Q |
58 |
ccaattgtgacatttgtgagcaagctcgtgaaagtggtgtatgcttactagcacattttgggtttttagaataacatgtaaaatatatggtaaattattt |
157 |
Q |
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|||| |||||||| | |||||||||| ||||||||||| ||| |||| |||| ||| ||||||| |||| || || || ||||||| |||||||| |
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| T |
28924385 |
ccaactgtgacatctatgagcaagcttatgaaagtggtgcatgtttaccagcaagtttggggttttcagaaggtcaagtgaagtatatgggaaattattc |
28924286 |
T |
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| Q |
158 |
taggcagcagaggaatc |
174 |
Q |
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||||||| ||||||||| |
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| T |
28924285 |
taggcagtagaggaatc |
28924269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 18120546 - 18120599
Alignment:
| Q |
176 |
gatgacatgtcatcttatgtttttgataacatgcttttcagtttattttagtag |
229 |
Q |
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||||||||||||||||| ||| || || |||| |||||||||||||||||||| |
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| T |
18120546 |
gatgacatgtcatcttacgttattcttagcatgtttttcagtttattttagtag |
18120599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 25537656 - 25537599
Alignment:
| Q |
172 |
atctgatgacatgtcatcttatgtttttgataacatgcttttcagtttattttagtag |
229 |
Q |
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||||||||||| ||||||||| ||| || || |||| |||||||||||||||||||| |
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| T |
25537656 |
atctgatgacaggtcatcttacgttattcttagcatgtttttcagtttattttagtag |
25537599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 16817106 - 16817162
Alignment:
| Q |
173 |
tctgatgacatgtcatcttatgtttttgataacatgcttttcagtttattttagtag |
229 |
Q |
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|
|||||||||| ||||||||| ||| || ||||||| |||||||||||||||||||| |
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| T |
16817106 |
tctgatgacaagtcatcttacgttattcttaacatgtttttcagtttattttagtag |
16817162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 13287710 - 13287764
Alignment:
| Q |
175 |
tgatgacatgtcatcttatgtttttgataacatgcttttcagtttattttagtag |
229 |
Q |
| |
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|||||||| ||||||||| ||| || ||||||| |||||||||||||||||||| |
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| T |
13287710 |
tgatgacaagtcatcttacgttattcttaacatgtttttcagtttattttagtag |
13287764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 16228344 - 16228398
Alignment:
| Q |
175 |
tgatgacatgtcatcttatgtttttgataacatgcttttcagtttattttagtag |
229 |
Q |
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|||||||| ||||||||| ||| || || ||||||||||||||||||||||||| |
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| T |
16228344 |
tgatgacaggtcatcttacgttattcttagcatgcttttcagtttattttagtag |
16228398 |
T |
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