View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_388 (Length: 229)
Name: NF10261A_low_388
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_388 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 6958430 - 6958652
Alignment:
| Q |
7 |
tggtaggaatagttgtaggtttttagtgtcatttgaagtttgaattctgcttgaaaattgtcggtcttactcttgaaaaataggcataggtgtaatgtga |
106 |
Q |
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| T |
6958430 |
tggtaggaatagttataggtttttagtgtcatttgaagtttgaattctgcttgaaaattgtcggtcttactcttgaaaaataggcataggtgtaatgtga |
6958529 |
T |
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| Q |
107 |
ttccataaacttttgttgattgaatggaaagttgagattcgaaccaatttgacaaagcctgtcaatgatgtggactctgtagttacaattagtggtgatg |
206 |
Q |
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| T |
6958530 |
ttccataaacttttgttgattgaatggaaagttgagattcgaaccaatttgacaaagcctgtcaatgatgtggactctgtagttacaattagtggtgatg |
6958629 |
T |
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| Q |
207 |
caactcttcaggtacttactcta |
229 |
Q |
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| T |
6958630 |
caactcttcaggtacttactcta |
6958652 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 31081743 - 31081843
Alignment:
| Q |
26 |
tttttagtgtcatttgaagtttgaattctgcttgaaaattgtcggtcttac---tcttgaaaaataggcat-aggtgtaatgtgattccataaacttttg |
121 |
Q |
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| T |
31081743 |
ttttttgtgtcatttgaagttttaattctgatagaaaattgcaggtcttacacttcttgaataataggaataaggtgcaccatgattccataaacttttg |
31081842 |
T |
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| Q |
122 |
t |
122 |
Q |
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| T |
31081843 |
t |
31081843 |
T |
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