View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_391 (Length: 229)
Name: NF10261A_low_391
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_391 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 42706800 - 42706579
Alignment:
| Q |
9 |
agatgatgccatgttgtctgtaacttccatttgtttcttcataggcatttgagcttcacgctttctagatatttgttcttgaggctgtagtagggctcat |
108 |
Q |
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| T |
42706800 |
agatgatgccatgttgtctgtaatttccatctgtctcttcataggcatttgagcttcacgctttctagatatttttccttgaggctgtagtagggctcat |
42706701 |
T |
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| Q |
109 |
gagttgtaaagagactcagagtgattggttttc-tgtgcattgttgtagatgtgagtcttgggtggaggagtgtgagcctgagtgaaaccctgatcaggg |
207 |
Q |
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| T |
42706700 |
gcgttgtaaagagacttatagtgattggtttccttgagcattgttgtagatgtgagtcttgggtggaggagtgtgagcctgagtgaaaccctgatcaggg |
42706601 |
T |
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| Q |
208 |
gctttgcctcctgatttgttga |
229 |
Q |
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| T |
42706600 |
gctttgcctcctgatttgttga |
42706579 |
T |
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