View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_393 (Length: 229)
Name: NF10261A_low_393
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_393 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 32853659 - 32853431
Alignment:
| Q |
1 |
atgcaaataagttattctctactatgattaatgatcaaaaatctggtgagatgnnnnnnnnagatagtggctgcagcaagcatgtaacagggaatcaaac |
100 |
Q |
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| T |
32853659 |
atgcaaataagttattctctactatgattaatgatcaaaaatctggtgagatgtggtttttagatagtggctgcagcaatcatgtaacagggaatcaaac |
32853560 |
T |
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| Q |
101 |
catatttgaagagctaaataaaaattattcttctcatgttgaacttggtgatggaaaacatgttaaaattgaaggaaagggggttatagcagttcatact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32853559 |
catatttgaagagctaaataaaaattattcttctcatgttgaacttggtgatggaaaacatgttaaaattgaaggaaagggggttatagcagttcatact |
32853460 |
T |
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| Q |
201 |
agtcaaggcaacaaacaattcattcatga |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
32853459 |
agtcaaggcaacaaacaattcattcatga |
32853431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 37176795 - 37176567
Alignment:
| Q |
1 |
atgcaaataagttattctctactatgattaatgatcaaaaatctggtgagatgnnnnnnnnagatagtggctgcagcaagcatgtaacagggaatcaaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| || ||||| |||||||||||||||||||| |
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| T |
37176795 |
atgcaaataagttattctctactatgattaatgataaaaaatctggtgagatgtggtttttagatagtggttgtagcaatcatgtaacagggaatcaaac |
37176696 |
T |
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| Q |
101 |
catatttgaagagctaaataaaaattattcttctcatgttgaacttggtgatggaaaacatgttaaaattgaaggaaagggggttatagcagttcatact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37176695 |
catatttgaagagctaaataaaaattattcttctcatgttgaacttggtgatggaaaacatgttaaaattgaaggaaagggggttatagcagttcatact |
37176596 |
T |
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| Q |
201 |
agtcaaggcaacaaacaattcattcatga |
229 |
Q |
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| T |
37176595 |
agtcaaggcaacaaacaattcattcatga |
37176567 |
T |
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