View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_398 (Length: 228)
Name: NF10261A_low_398
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_398 |
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Alignment Details
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 7617750 - 7617833
Alignment:
| Q |
8 |
gttttgctttgaacaacaaagtacaaacataaattaagaccagacaatttttaaggttaagcaccatgtctgactcagatataa |
91 |
Q |
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| T |
7617750 |
gttttgctttgaacaacaaagtacaaacataaattaagaccagacaatttttaaggttaagcaccatgtctgactcagatataa |
7617833 |
T |
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Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 7617891 - 7617964
Alignment:
| Q |
149 |
aaacaaaacaagccaaacccaaccttaatcttccaccaggaagaatgggttggcctttcattggagaaactatt |
222 |
Q |
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| T |
7617891 |
aaacaaaacaagccaaacccaaccttaatcttccaccaggaagaatgggttggcctttcattggagaaactatt |
7617964 |
T |
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