View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_399 (Length: 228)
Name: NF10261A_low_399
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_399 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 41222986 - 41222765
Alignment:
| Q |
1 |
gtaatttgatgccttcagaagcaccgatgtcacttgttatttgatttcatccaactttgcatgattcaacatggagaagacatgacatattggtgactat |
100 |
Q |
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| T |
41222986 |
gtaatttgatgccttcagaagcaccgatgtcacttgttatttgatttcatccaactttgcaggattcaacatggagaagacatgacatattggtgactat |
41222887 |
T |
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| Q |
101 |
gttgttttactatgtagcttgtgttgtagcatatacgtagagatcgttctatttcactggttaaaggagtatttgttgtgtcacactggttctaggaaca |
200 |
Q |
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| T |
41222886 |
gttgtggtactatgtagcttatgttgtagcatatatgtagagatcattctatttcactggttacagtagtatgtgttgtgtcaaactggttctaggaaca |
41222787 |
T |
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| Q |
201 |
atactttattattgggttgcac |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
41222786 |
atactttattattgggttgcac |
41222765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 16234034 - 16234263
Alignment:
| Q |
1 |
gtaatttgatgccttcagaagcaccgatgtcacttgttatttgatttcatccaactttgcatgattcaacatggagaagacatgacatattggtgac--- |
97 |
Q |
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| T |
16234034 |
gtaatttgatgccttcagaagcaccgatgtcacttgttattggatttcatccaactttgcaggattcaacatggagaagacatgacatattggtgactat |
16234133 |
T |
|
| Q |
98 |
-tatgttgttttactatgtagcttgtgttgtagcata----tacgtagagatcgttctatttcactggttaaaggagtatttgttgtgtcacactggttc |
192 |
Q |
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| T |
16234134 |
atatgttgttttactatggagcttatgttgtagcatatacgtacgtagagatcgttctatttcactggttaaaggagtatttgttgtgtcacactggttc |
16234233 |
T |
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| Q |
193 |
taggaacaatactttattattgggttgcac |
222 |
Q |
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| T |
16234234 |
taggaacaatactttattattgggttgcac |
16234263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 41217174 - 41217096
Alignment:
| Q |
21 |
gcaccgatgtcacttgttatttgatttcatccaactttgcatgattcaacatggagaagacatgacatattggtgacta |
99 |
Q |
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|||| ||| ||| |||||| ||||||||||||||| ||||| |||||| ||| ||||||||||||||||||||||||| |
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| T |
41217174 |
gcactgatatcaattgttacttgatttcatccaaccttgcaggattcacaatgaagaagacatgacatattggtgacta |
41217096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 41217055 - 41217009
Alignment:
| Q |
176 |
ttgtgtcacactggttctaggaacaatactttattattgggttgcac |
222 |
Q |
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| T |
41217055 |
ttgtgtcacactggttctaggaataatgttttatttttgggttgcac |
41217009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 1598683 - 1598903
Alignment:
| Q |
2 |
taatttgatgccttcagaagcaccgatgtcacttgttatttgatttcatccaactttgcatgattcaacatggagaagacatgacatattggtgactatg |
101 |
Q |
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||||||||||| ||||||| ||| ||| |||||||||| ||||||||||||| ||||||| |||| ||||||||||||||||||||||||| |||||||| |
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| T |
1598683 |
taatttgatgctttcagaaacactgatatcacttgttacttgatttcatccatctttgcaggatttaacatggagaagacatgacatattgttgactatg |
1598782 |
T |
|
| Q |
102 |
ttgttttactatgtagcttgtgttgtagcatatacgtagagatcgttctatttcactggttaaaggagtatttgttgtgtcacactggttctaggaacaa |
201 |
Q |
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| | |||||||||| ||| || |||||||||| ||| || ||| | ||||||||| |||| || ||||| | ||||||||| || ||||||| ||||| |
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| T |
1598783 |
tcctgttactatgtaacttaggtcgtagcatatatgtaaagttcggtttatttcactagttatagtagtatattttgtgtcacgcttgttctagaaacaa |
1598882 |
T |
|
| Q |
202 |
tactttattattgggttgcac |
222 |
Q |
| |
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||| || || || |||||||| |
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| T |
1598883 |
tacattgttttttggttgcac |
1598903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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