View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_40 (Length: 413)
Name: NF10261A_low_40
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_40 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 3 - 413
Target Start/End: Complemental strand, 9996621 - 9996213
Alignment:
| Q |
3 |
gttttgtagaattgagttatagtcaatccaaattttaagatggagagtccattcaagatctacaagatgagccataattggccactcgagtcattctcta |
102 |
Q |
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| T |
9996621 |
gttttgtagaattgagttatagtcaatccaaattttaagatggagagtccattcaagatctacaagatgagccgtaattggccactcgagtcattctcta |
9996522 |
T |
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| Q |
103 |
tgtatagtcgttagcgtattcagatgtgataagagtctcatattgatgagatataacctgaagaatactttatgagtgggagtaatccctcgccttacaa |
202 |
Q |
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| T |
9996521 |
tgtatagtcattagcgtattcagatgcgataagagtctcatattgatgagatataacctgaagaatacttt--gagtgggagtaatccctcgccttacaa |
9996424 |
T |
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| Q |
203 |
gtcgattttgtagggttgtgtaaagctaaacctaaatttgattcattacaagaagtcattatttcgcgccattttggatttgaaactcaaatgtttcttc |
302 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9996423 |
gtcgattttgtagggttgtgtaaagctaaacccaaatttgattcattacaagaagtcattatttcgcgccattttggatttgaaactcaaatgtttcttc |
9996324 |
T |
|
| Q |
303 |
ctttgttacatgagagaagaagacataataataaggcttaatttcatattcagtcttgaatatagcaattgtgtaattttggttgctcactttttaattg |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9996323 |
ctttgttacatgagagaagaagacataataataaggcttaatttcatattcagtcttgaatatagcaattgtgtaattttggttgctcactttttaattg |
9996224 |
T |
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| Q |
403 |
tgctattttga |
413 |
Q |
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| T |
9996223 |
tgctattttga |
9996213 |
T |
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