View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_400 (Length: 228)
Name: NF10261A_low_400
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_400 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 36850165 - 36849982
Alignment:
| Q |
17 |
gctggtgcttggtggaggaagtcagtgaaccacggtgtttgggtttccagcgattctcggctggaggaaacaaatgaaacgtgaattggaaagaagaagc |
116 |
Q |
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| T |
36850165 |
gctggtgcttggtggaggaagtgagtgaaccacggtgtttgggtttccggcgattctcggctggaggaaacaaatgaaacgtgaattggaaagaagaagc |
36850066 |
T |
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| Q |
117 |
gtgataccacactgtgttatgcataccaaaggctaaaattgtaatttttgggggcctaggaagatata-gggggcttaaaaagta |
200 |
Q |
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| T |
36850065 |
gtga-accacactgtgttatgcataccaaaggctaaaattgtaatttttgtgggcctagaaagatataggggggcttaaaaagta |
36849982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 32690898 - 32690999
Alignment:
| Q |
17 |
gctggtgcttggtggaggaagtcagtgaaccacggtgtttgggtttccagcgattctcggctggaggaaacaaatgaaacgtgaattggaaagaagaagc |
116 |
Q |
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|||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
32690898 |
gctggtgcttggtggaggaagtgagtgaaccacggtgtgtgggtttccggcgattctcggctggaggaaagaa--gaaacgtgaattggaaagaagaagc |
32690995 |
T |
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| Q |
117 |
gtga |
120 |
Q |
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|||| |
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| T |
32690996 |
gtga |
32690999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 16075046 - 16075115
Alignment:
| Q |
17 |
gctggtgcttggtggaggaagtcagtgaaccacggtgtttgggtttccagcgattctcggctggaggaaa |
86 |
Q |
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| T |
16075046 |
gctggtgcttggtggaggaagtgagtgaaccacggtgtttgtgtttccggcgattctcggctggaggaaa |
16075115 |
T |
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