View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_401 (Length: 228)
Name: NF10261A_low_401
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_401 |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0156 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 34723701 - 34723929
Alignment:
| Q |
1 |
aggtaaattttgtgtatgagtctgacaaatatacatcagggccgaacatttttcatgcatctgttaacagcagcagttcccctatttggtcttccatcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34723701 |
aggtaaattttgtgtatgagtctgacaaatatacatcagggccgaacatttttcatgcatctgttaacagcagcagttcccctatttggtcttccatcat |
34723800 |
T |
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| Q |
101 |
ccgtgctaaagagattctaaaaaatggctattcttggcgcgtagggtctggctcttcttctttctgg-tcagcctttggagtgattttggcattcttgga |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34723801 |
ccgtgctaaagagattctaaaaaatggctattcttggcgcgtagggtctggctcttcttctttctggttcagcctttggagtgattttggcattcttgga |
34723900 |
T |
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| Q |
200 |
tctcaaatccccatcatagacatccatga |
228 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
34723901 |
tctcaaatccccatcatagacatccatga |
34723929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 34602425 - 34602652
Alignment:
| Q |
1 |
aggtaaattttgtgtatgagtctgacaaatatacatcagggccgaacatttttcatgcatctgttaacagcagcagttcccctatttggtcttccatcat |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34602425 |
aggtaaattttgtg-atgagtctgacaaatatacatcagggccgaacatttttcatgcatctgttaacagcagcagttcccctatttggtcttccatcat |
34602523 |
T |
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| Q |
101 |
ccgtgctaaagagattctaaaaaatggctattcttggcgcgtagggtctggctcttcttctttctgg-tcagcctttggagtgattttggcattcttgga |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34602524 |
ccgtgctaaagagattctaaaaaatggctattcttggcgcgtagggtctggctcttcttctttctggttcagcctttggagtgattttggcattcttgga |
34602623 |
T |
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| Q |
200 |
tctcaaatccccatcatagacatccatga |
228 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
34602624 |
tctcaaatccccatcatagacatccatga |
34602652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0156 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: scaffold0156
Description:
Target: scaffold0156; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 21 - 228
Target Start/End: Complemental strand, 17410 - 17202
Alignment:
| Q |
21 |
tctgacaaatatacatcagggccgaacatttttcatgcatctgttaacagcagcagttcccctatttggtcttccatcatccgtgctaaagagattctaa |
120 |
Q |
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||||| |||||||| ||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
17410 |
tctgataaatatacttcagggccgaacatttttcatgcatatgttaacagcagaagctcccctatttggtcttccatcattcgtgctaaagagattctaa |
17311 |
T |
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| Q |
121 |
aaaatggctattcttggcgcgtagggtctggctcttcttctttctgg-tcagcctttggagtgattttggcattcttggatctcaaatccccatcataga |
219 |
Q |
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|||||||||||||||||| |||||||||||||| ||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17310 |
aaaatggctattcttggcacgtagggtctggctattcttctttttggttcaacctttggagtgattttggcattcttggatctcaaatccccatcataga |
17211 |
T |
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| Q |
220 |
catccatga |
228 |
Q |
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||||||||| |
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| T |
17210 |
catccatga |
17202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 575318 - 575386
Alignment:
| Q |
71 |
cagcagttcccctatttggtcttccatcatccgtgctaaagagattctaaaaaatggctattcttggcg |
139 |
Q |
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||||||||| || | |||||| || ||||| ||||||||||| ||||| |||||||| ||||||||||| |
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| T |
575318 |
cagcagttcacccacttggtcatctatcatacgtgctaaagatattctcaaaaatggttattcttggcg |
575386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 178395 - 178432
Alignment:
| Q |
69 |
agcagcagttcccctatttggtcttccatcatccgtgc |
106 |
Q |
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|||||||| |||||||||||||| |||||||||||||| |
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| T |
178395 |
agcagcagctcccctatttggtcctccatcatccgtgc |
178432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 228
Target Start/End: Complemental strand, 22663513 - 22663407
Alignment:
| Q |
123 |
aatggctattcttggcgcgtagggtctggctcttcttctttctggt-cagcctttggagtgattttggcattcttggatctcaaatccccatcatagaca |
221 |
Q |
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||||||||||||||||| | ||| ||||| ||||| || || |||| ||||| |||||||| ||||| || ||| ||||||||||||||||||||| |
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| T |
22663513 |
aatggctattcttggcgagcaggttctggttcttcatcgttttggttcagccattggagtggctttggatgcctcggagctcaaatccccatcatagaca |
22663414 |
T |
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| Q |
222 |
tccatga |
228 |
Q |
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| ||||| |
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| T |
22663413 |
tacatga |
22663407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 154
Target Start/End: Complemental strand, 31324201 - 31324115
Alignment:
| Q |
68 |
cagcagcagttcccctatttggtcttccatcatccgtgctaaagagattctaaaaaatggctattcttggcgcgtagggtctggctc |
154 |
Q |
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||||||||| |||||| |||| | |||||||| ||||| ||||| |||| |||||||| || ||||||||||| ||||| ||||| |
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| T |
31324201 |
cagcagcagctccccttcttgggcatccatcattcgtgccaaagatgttcttaaaaatgggtactcttggcgcgtcgggtcgggctc |
31324115 |
T |
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