View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10261A_low_406 (Length: 227)
Name: NF10261A_low_406
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_406 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 40225838 - 40225618
Alignment:
| Q |
7 |
tttggtgttacaattttttgacccaaaagtgccagaacagcacttataaagtggtttttccccctctaaaaatcgatattataattagagatcttatttg |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40225838 |
tttgatgttacaattttttgacccaaaagtgccagaacagcacttataaagtggtttttccccctctaaaaatcgatattataattagagatcttatttg |
40225739 |
T |
|
| Q |
107 |
aaagttacattaatgttttaatatttatttggtttacgtacgtagtcctatataaaagaaaattaagttatgtgcaccatcccctattctcaaatcatat |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40225738 |
aaagttacattaatgttttaatatttatttgttttacgtacgtagtcctatataaaagaaaattaagttatgtgcaccatcccctattctcaaatcatat |
40225639 |
T |
|
| Q |
207 |
aacctttttcctttcccaagg |
227 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
40225638 |
aacctttttcctttcccaagg |
40225618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University