View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261A_low_409 (Length: 227)

Name: NF10261A_low_409
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261A_low_409
NF10261A_low_409
[»] chr8 (11 HSPs)
chr8 (1-127)||(10279365-10279491)
chr8 (18-80)||(759871-759933)
chr8 (16-53)||(16307356-16307393)
chr8 (16-53)||(37250749-37250786)
chr8 (13-52)||(16311105-16311144)
chr8 (17-48)||(32917368-32917399)
chr8 (13-52)||(34802979-34803018)
chr8 (16-53)||(10901023-10901060)
chr8 (16-53)||(16249620-16249657)
chr8 (16-53)||(16312830-16312867)
chr8 (16-53)||(34801284-34801321)
[»] chr6 (5 HSPs)
chr6 (16-53)||(20872935-20872972)
chr6 (13-52)||(9449955-9449994)
chr6 (16-53)||(21985960-21985997)
chr6 (16-53)||(23409670-23409707)
chr6 (13-53)||(21055743-21055783)
[»] chr5 (6 HSPs)
chr5 (16-53)||(4062611-4062648)
chr5 (16-53)||(7332521-7332558)
chr5 (13-52)||(4063709-4063748)
chr5 (13-52)||(29863730-29863769)
chr5 (16-53)||(23570941-23570978)
chr5 (16-53)||(29865455-29865492)
[»] chr4 (4 HSPs)
chr4 (16-61)||(35695693-35695738)
chr4 (16-53)||(55050497-55050534)
chr4 (13-52)||(55051600-55051639)
chr4 (16-53)||(26289579-26289616)
[»] chr1 (4 HSPs)
chr1 (13-52)||(17001519-17001558)
chr1 (13-52)||(34161702-34161741)
chr1 (16-53)||(17006075-17006112)
chr1 (16-53)||(19103075-19103112)
[»] scaffold0169 (1 HSPs)
scaffold0169 (2-60)||(3686-3744)
[»] scaffold0119 (1 HSPs)
scaffold0119 (19-53)||(41046-41080)
[»] chr7 (1 HSPs)
chr7 (16-53)||(29913043-29913080)
[»] chr3 (2 HSPs)
chr3 (16-53)||(19816985-19817022)
chr3 (21-61)||(9264817-9264857)
[»] chr2 (2 HSPs)
chr2 (21-61)||(45055177-45055217)
chr2 (21-61)||(45660634-45660674)


Alignment Details
Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 10279491 - 10279365
Alignment:
Q  1 agttgatgatatttatatgagtttgttgaaggagttggagatttttgggtaataaatttacaccaaaattagacctaattgnnnnnnntgatacatcatt 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  10279491 agttgaagatatttatatgagtttgttgaaggagttggagatttttgggtaataaatttacaccaaaattagacctaattgaaaaaaatgatacatcatt 10279392  T
Q  101 gtaaaagatcaaaattgtagtaatttc 127  Q
    |||||||| |||||||| |||||||||    
T  10279391 gtaaaagaccaaaattgaagtaatttc 10279365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 759933 - 759871
Alignment:
Q  18 tgagtttgttgaaggagttggagatttttgggtaataaatttacaccaaaattagacctaatt 80  Q
    ||||||||||||||||||||| ||||||||| |||| |||||||   |||||||||| |||||    
T  759933 tgagtttgttgaaggagttggggatttttggataattaatttaccaaaaaattagacttaatt 759871  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 16307356 - 16307393
Alignment:
Q  16 tatgagtttgttgaaggagttggagatttttgggtaat 53  Q
    |||||||||||| |||||||||||||||||||||||||    
T  16307356 tatgagtttgttaaaggagttggagatttttgggtaat 16307393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 37250749 - 37250786
Alignment:
Q  16 tatgagtttgttgaaggagttggagatttttgggtaat 53  Q
    |||||||||||| |||||||||||||||||||||||||    
T  37250749 tatgagtttgttaaaggagttggagatttttgggtaat 37250786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 16311105 - 16311144
Alignment:
Q  13 ttatatgagtttgttgaaggagttggagatttttgggtaa 52  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  16311105 ttatatgagtttgttgaaggatttgaagatttttgggtaa 16311144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 32917399 - 32917368
Alignment:
Q  17 atgagtttgttgaaggagttggagatttttgg 48  Q
    ||||||||||||||||||||||||||||||||    
T  32917399 atgagtttgttgaaggagttggagatttttgg 32917368  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 34803018 - 34802979
Alignment:
Q  13 ttatatgagtttgttgaaggagttggagatttttgggtaa 52  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  34803018 ttatatgagtttgttgaaggatttgaagatttttgggtaa 34802979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 10901023 - 10901060
Alignment:
Q  16 tatgagtttgttgaaggagttggagatttttgggtaat 53  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  10901023 tatgagtttgttgaaggagttggaaattattgggtaat 10901060  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 16249620 - 16249657
Alignment:
Q  16 tatgagtttgttgaaggagttggagatttttgggtaat 53  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  16249620 tatgagtttgttaaaggagtttgagatttttgggtaat 16249657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 16312830 - 16312867
Alignment:
Q  16 tatgagtttgttgaaggagttggagatttttgggtaat 53  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  16312830 tatgagtttgttaaaggagtttgagatttttgggtaat 16312867  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 34801321 - 34801284
Alignment:
Q  16 tatgagtttgttgaaggagttggagatttttgggtaat 53  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  34801321 tatgagtttgttaaaggagtttgagatttttgggtaat 34801284  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 20872972 - 20872935
Alignment:
Q  16 tatgagtttgttgaaggagttggagatttttgggtaat 53  Q
    |||||||||||| |||||||||||||||||||||||||    
T  20872972 tatgagtttgttaaaggagttggagatttttgggtaat 20872935  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 9449955 - 9449994
Alignment:
Q  13 ttatatgagtttgttgaaggagttggagatttttgggtaa 52  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  9449955 ttatatgagtttgttgaaggatttgaagatttttgggtaa 9449994  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 21985997 - 21985960
Alignment:
Q  16 tatgagtttgttgaaggagttggagatttttgggtaat 53  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  21985997 tatgagtttgttgaaggagttgaagatttttggataat 21985960  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 23409670 - 23409707
Alignment:
Q  16 tatgagtttgttgaaggagttggagatttttgggtaat 53  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  23409670 tatgagtttgttaaaggagtttgagatttttgggtaat 23409707  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 21055743 - 21055783
Alignment:
Q  13 ttatatgagtttgttgaaggagttggagatttttgggtaat 53  Q
    |||| ||| |||||||||||||||| |||||||||||||||    
T  21055743 ttatgtgattttgttgaaggagttgaagatttttgggtaat 21055783  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 4062648 - 4062611
Alignment:
Q  16 tatgagtttgttgaaggagttggagatttttgggtaat 53  Q
    |||||||||||| |||||||||||||||||||||||||    
T  4062648 tatgagtttgttaaaggagttggagatttttgggtaat 4062611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 7332521 - 7332558
Alignment:
Q  16 tatgagtttgttgaaggagttggagatttttgggtaat 53  Q
    |||||||||||| |||||||||||||||||||||||||    
T  7332521 tatgagtttgttaaaggagttggagatttttgggtaat 7332558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 4063748 - 4063709
Alignment:
Q  13 ttatatgagtttgttgaaggagttggagatttttgggtaa 52  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  4063748 ttatatgagtttgttgaaggatttgaagatttttgggtaa 4063709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 29863730 - 29863769
Alignment:
Q  13 ttatatgagtttgttgaaggagttggagatttttgggtaa 52  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  29863730 ttatatgagtttgttgaaggatttgaagatttttgggtaa 29863769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 23570941 - 23570978
Alignment:
Q  16 tatgagtttgttgaaggagttggagatttttgggtaat 53  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  23570941 tatgagtttgttgaaggagttgaagatttttggataat 23570978  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 29865455 - 29865492
Alignment:
Q  16 tatgagtttgttgaaggagttggagatttttgggtaat 53  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  29865455 tatgagtttgttaaaggagtttgagatttttgggtaat 29865492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 35695738 - 35695693
Alignment:
Q  16 tatgagtttgttgaaggagttggagatttttgggtaataaatttac 61  Q
    ||||||||| ||||||||||||||||||||||| |||||| |||||    
T  35695738 tatgagtttattgaaggagttggagatttttggataataactttac 35695693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 55050534 - 55050497
Alignment:
Q  16 tatgagtttgttgaaggagttggagatttttgggtaat 53  Q
    |||||||||||| |||||||||||||||||||||||||    
T  55050534 tatgagtttgttaaaggagttggagatttttgggtaat 55050497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 55051639 - 55051600
Alignment:
Q  13 ttatatgagtttgttgaaggagttggagatttttgggtaa 52  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  55051639 ttatatgagtttgttgaaggatttgaagatttttgggtaa 55051600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 26289579 - 26289616
Alignment:
Q  16 tatgagtttgttgaaggagttggagatttttgggtaat 53  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  26289579 tatgagtttgttaaaggagtttgagatttttgggtaat 26289616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 17001519 - 17001558
Alignment:
Q  13 ttatatgagtttgttgaaggagttggagatttttgggtaa 52  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  17001519 ttatatgagtttgttgaaggatttgaagatttttgggtaa 17001558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 34161741 - 34161702
Alignment:
Q  13 ttatatgagtttgttgaaggagttggagatttttgggtaa 52  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  34161741 ttatatgagtttgttgaaggatttgaagatttttgggtaa 34161702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 17006075 - 17006112
Alignment:
Q  16 tatgagtttgttgaaggagttggagatttttgggtaat 53  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  17006075 tatgagtttgttaaaggagttagagatttttgggtaat 17006112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 19103075 - 19103112
Alignment:
Q  16 tatgagtttgttgaaggagttggagatttttgggtaat 53  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  19103075 tatgagtttgttgaaggagttgaagatttttggataat 19103112  T

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Target: scaffold0169 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 3744 - 3686
Alignment:
Q  2 gttgatgatatttatatgagtttgttgaaggagttggagatttttgggtaataaattta 60  Q
    |||||||||| |||| | ||||||||||||||||||| |||||| || |||| ||||||    
T  3744 gttgatgataattattttagtttgttgaaggagttggggattttaggataattaattta 3686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 41080 - 41046
Alignment:
Q  19 gagtttgttgaaggagttggagatttttgggtaat 53  Q
    ||||||||| |||||||||||||||||||||||||    
T  41080 gagtttgttaaaggagttggagatttttgggtaat 41046  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 29913080 - 29913043
Alignment:
Q  16 tatgagtttgttgaaggagttggagatttttgggtaat 53  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  29913080 tatgagtttgttaaaggagttggagatatttgggtaat 29913043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 19816985 - 19817022
Alignment:
Q  16 tatgagtttgttgaaggagttggagatttttgggtaat 53  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  19816985 tatgagtttgttaaaggagtttgagatttttgggtaat 19817022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 9264857 - 9264817
Alignment:
Q  21 gtttgttgaaggagttggagatttttgggtaataaatttac 61  Q
    |||||||||||||||| ||||| |||||||||| |||||||    
T  9264857 gtttgttgaaggagtttgagatatttgggtaattaatttac 9264817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 45055177 - 45055217
Alignment:
Q  21 gtttgttgaaggagttggagatttttgggtaataaatttac 61  Q
    |||||||||||||||| ||||| |||||||||| |||||||    
T  45055177 gtttgttgaaggagtttgagatatttgggtaattaatttac 45055217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 45660674 - 45660634
Alignment:
Q  21 gtttgttgaaggagttggagatttttgggtaataaatttac 61  Q
    |||||||||||||||| ||||| |||||||||| |||||||    
T  45660674 gtttgttgaaggagtttgagatatttgggtaattaatttac 45660634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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