View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10261A_low_410 (Length: 227)
Name: NF10261A_low_410
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_410 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 21440960 - 21440734
Alignment:
| Q |
1 |
aataaacagtcattttggtatgtaaatgtgtgactaaggagtgacaaatttgagaatgttcattgtaattttgattaattcaaaaactaaagcgacagta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21440960 |
aataaacagtcattttggtatgtaaatgtgtgactaaggagagacacatttgagaatgttcattgtaattttgattaattcaaaaactaaagcgacagta |
21440861 |
T |
|
| Q |
101 |
ttgctggacacattcaggaactacataggatctttaccgattgannnnnnnngtttgtttgtgtgatcgagtatgttaatggaatcaacatgagagttca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21440860 |
ttgctggacacattcaggaactacataggatctttaccggttgattttttttgtttgtttttgtgattgagtatgttaatggaatcaacatgagagttca |
21440761 |
T |
|
| Q |
201 |
tgcaatttgttgtgttgtgaattgtga |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
21440760 |
tgcaatttgttgtgttgtgaattgtga |
21440734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 21440267 - 21440065
Alignment:
| Q |
1 |
aataaacagtcattttggtatgtaaatgtgtgactaaggagtgacaaatttgagaatgttcattgtaattttgattaattcaaaaactaaagcgacagta |
100 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||| || ||| |||| |||||||||| | ||||||||||||||| || |||| || ||||||| |
|
|
| T |
21440267 |
aataaacaatcattttggcatgtaaatgtgtgacaaatgagagacacatttgagaattat-----taattttgattaatttgaatactatagtgacagta |
21440173 |
T |
|
| Q |
101 |
ttgctggacacattcaggaactacataggatctttaccgattgannnnnnnngtttgtttgtgtgatcgagtatgttaatggaatcaacatgagagttca |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| ||| ||| ||||| ||||||||||||||||||| ||| |||||||| |
|
|
| T |
21440172 |
gtgccggacacattcaggaactacataggatctttcccg------------------tttttgtgaatgagtatgttaatggaatcagcattagagttca |
21440091 |
T |
|
| Q |
201 |
tgcaatttgttgtgttgtgaattgtg |
226 |
Q |
| |
|
|||||||||||| ||||| ||||||| |
|
|
| T |
21440090 |
tgcaatttgttgcgttgtcaattgtg |
21440065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 12743045 - 12743113
Alignment:
| Q |
157 |
gtttgtgtgatcgagtatgttaatggaatcaacatgagagttcatgcaatttgttgtgttgtgaattgtga |
227 |
Q |
| |
|
|||| |||||| |||||||||||||||| ||||| ||||||||| ||| ||||||||||||||||||| |
|
|
| T |
12743045 |
gtttttgtgattaagtatgttaatggaattaacat--gagttcatggaatcggttgtgttgtgaattgtga |
12743113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University