View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10261A_low_418 (Length: 225)
Name: NF10261A_low_418
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_418 |
 | |
|
| [»] scaffold0482 (1 HSPs) |
| | |
|
| [»] scaffold0040 (2 HSPs) |
| | |
|
| [»] scaffold0028 (2 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
| [»] scaffold0233 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 30445328 - 30445549
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30445328 |
gtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttaaaaatagccagaacgttct |
30445427 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| |
|
|
| T |
30445428 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgtataacttgcagcccactt |
30445527 |
T |
|
| Q |
201 |
ctgatgatgtcatgtccttttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
30445528 |
ctgatgatgtcatgtccttttg |
30445549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 30454700 - 30454921
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30454700 |
gtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttaaaaatagccagaacgttct |
30454799 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| |
|
|
| T |
30454800 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgtataacttgcagcccactt |
30454899 |
T |
|
| Q |
201 |
ctgatgatgtcatgtccttttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
30454900 |
ctgatgatgtcatgtccttttg |
30454921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 30459758 - 30459979
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30459758 |
gtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttaaaaatagccagaacgttct |
30459857 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| |
|
|
| T |
30459858 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgtataacttgcagcccactt |
30459957 |
T |
|
| Q |
201 |
ctgatgatgtcatgtccttttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
30459958 |
ctgatgatgtcatgtccttttg |
30459979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 18568727 - 18568506
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18568727 |
gtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttaaaaatagccagaacgttct |
18568628 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||| | ||||| |
|
|
| T |
18568627 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgtgtaacttgcagtccactt |
18568528 |
T |
|
| Q |
201 |
ctgatgatgtcatgtccttttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
18568527 |
ctgatgatgtcatgtccttttg |
18568506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 24412517 - 24412296
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24412517 |
gtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttct |
24412418 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccacta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| ||||||| |
|
|
| T |
24412417 |
cagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccactt |
24412318 |
T |
|
| Q |
201 |
ctgatgatgtcatgtccttttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
24412317 |
ctgatgatgtcatgtccttttg |
24412296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 22488875 - 22488655
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22488875 |
gtgatcaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttct |
22488776 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccacta |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||| |||||||||| | | |
|
|
| T |
22488775 |
cagaatgttctttctgatttgcctggctttgaaagcactgttgc-ttgcttgcacatgagataaccagctgtaatgagctgtataacttgctgcctaatg |
22488677 |
T |
|
| Q |
201 |
ctgatgatgtcatgtccttttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
22488676 |
ctgatgatgtcatgtccttttg |
22488655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 24421966 - 24421756
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
24421966 |
gtgaccaagggagaaaatagagctgctggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaa------ |
24421873 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccacta |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| ||||||| |
|
|
| T |
24421872 |
-----tgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccactt |
24421778 |
T |
|
| Q |
201 |
ctgatgatgtcatgtccttttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
24421777 |
ctgatgatgtcatgtccttttg |
24421756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 4635651 - 4635431
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| |||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||| |||| ||||| |
|
|
| T |
4635651 |
gtgatcaagggagaaaatagagctgttggatgcgtttttgatagttgtccaaagtctcaattgatttttcttttcttctttaaaatagctagaatgttct |
4635552 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccacta |
200 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||||||||| |||| |||||||||| ||||| |||||| ||||||||||||||| ||||| ||| |||| |
|
|
| T |
4635551 |
caaaatgttctttctgatttgcctggctttgaaagcactattgc-ttgcttgcgcgtgagagaaccagttgtaatgagttgtataacttgttgcgcactg |
4635453 |
T |
|
| Q |
201 |
ctgatgatgtcatgtccttttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
4635452 |
ctgatgatgtcatgtccttttg |
4635431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 8 - 177
Target Start/End: Original strand, 24278813 - 24278982
Alignment:
| Q |
8 |
agggagaaaatagagttgttggacacgtttt-tgatagctgtccaaagtctcatttgatttctcttttcttcttt-aaaatagccagaacgttctcagaa |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| ||||||||| ||||||||||||||||||||| || |
|
|
| T |
24278813 |
agggagaaaatagagttgttggacacgttttttgatagctgtccaaaatctcagttgatttctctcttcttctttaaaaatagccagaacgttctca-aa |
24278911 |
T |
|
| Q |
106 |
tgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatga |
177 |
Q |
| |
|
|||| | |||||||||||| |||||| ||| |||||| ||||||| |||||||| ||||| |||||||| |
|
|
| T |
24278912 |
tgttgtgtctgatttgcctaactttgcttgcattgttgc-ttgcttgtgcatgagagtaccagttgtaatga |
24278982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 8 - 177
Target Start/End: Complemental strand, 24383401 - 24383232
Alignment:
| Q |
8 |
agggagaaaatagagttgttggacacgttttt-gatagctgtccaaagtctcatttgatttctcttttcttcttt-aaaatagccagaacgttctcagaa |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||| ||||||||||||||||||||| || |
|
|
| T |
24383401 |
agggagaaaatagagttgttggacacgttttttgatagctgtccaaaatctcagttgatttctctcttcttctttaaaaatagccagaacgttctca-aa |
24383303 |
T |
|
| Q |
106 |
tgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatga |
177 |
Q |
| |
|
|||| | |||||||||||| |||||| ||| |||||| ||||||| |||||||| ||||| |||||||| |
|
|
| T |
24383302 |
tgttgtgtctgatttgcctaactttgcttgcattgttgc-ttgcttgtgcatgagagtaccagttgtaatga |
24383232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0482 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0482
Description:
Target: scaffold0482; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3222 - 3001
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3222 |
gtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtatcttttgatttctcttttcttctttaaaatagccagaacgttct |
3123 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| |
|
|
| T |
3122 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgtataacttgcagcccactt |
3023 |
T |
|
| Q |
201 |
ctgatgatgtcatgtccttttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
3022 |
ctgatgatgtcatgtccttttg |
3001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 7789577 - 7789798
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7789577 |
gtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtatcttttgatttctcttttcttctttaaaatagccagaacgttct |
7789676 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| |
|
|
| T |
7789677 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgtataacttgcagcccactt |
7789776 |
T |
|
| Q |
201 |
ctgatgatgtcatgtccttttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
7789777 |
ctgatgatgtcatgtccttttg |
7789798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 28352220 - 28352441
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28352220 |
gtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttct |
28352319 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccacta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||| |
|
|
| T |
28352320 |
cagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagttgtataacttgcagcccactt |
28352419 |
T |
|
| Q |
201 |
ctgatgatgtcatgtccttttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
28352420 |
ctgatgatgtcatgtccttttg |
28352441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 28368155 - 28368373
Alignment:
| Q |
4 |
accaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttctcag |
103 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28368155 |
accaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttctcag |
28368254 |
T |
|
| Q |
104 |
aatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccactactg |
203 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| ||||||| ||| |
|
|
| T |
28368255 |
aatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccacttctg |
28368354 |
T |
|
| Q |
204 |
atgatgtcatgtccttttg |
222 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
28368355 |
atgatgtcatgtccttttg |
28368373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 28375973 - 28376191
Alignment:
| Q |
4 |
accaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttctcag |
103 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28375973 |
accaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttctcag |
28376072 |
T |
|
| Q |
104 |
aatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccactactg |
203 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| ||||||| ||| |
|
|
| T |
28376073 |
aatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccacttctg |
28376172 |
T |
|
| Q |
204 |
atgatgtcatgtccttttg |
222 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
28376173 |
atgatgtcatgtccttttg |
28376191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 28383795 - 28384013
Alignment:
| Q |
4 |
accaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttctcag |
103 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28383795 |
accaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttctcag |
28383894 |
T |
|
| Q |
104 |
aatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccactactg |
203 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| ||||||| ||| |
|
|
| T |
28383895 |
aatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccacttctg |
28383994 |
T |
|
| Q |
204 |
atgatgtcatgtccttttg |
222 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
28383995 |
atgatgtcatgtccttttg |
28384013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 38529636 - 38529857
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctctttt-cttctttaaaatagccagaacgttc |
99 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||| |||| ||||||||||||||||||| ||||| |
|
|
| T |
38529636 |
gtgatcaagggagaaaatagagttgttggacacgttttttatagttgtccaaagtctcaattgatttctttttttcttctttaaaatagccagaccgttc |
38529735 |
T |
|
| Q |
100 |
tcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccact |
199 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||| | ||||| |||||| | |
|
|
| T |
38529736 |
tcagaatgttctttctgaattgtctgactttgaaagcactgttgc-ttgcttgcgcgtgagagaaccagctgtaatgagttgtttaacttgttgcccaat |
38529834 |
T |
|
| Q |
200 |
actgatgatgtcatgtccttttg |
222 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
38529835 |
gttgatgatgtcatgtccttttg |
38529857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 4951285 - 4951164
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
4951285 |
gtgatcaagggagaaactagagttgttggacacgtttttgataactgtctaaagtctcaattgatttctcttttcttcttaaaaataggaagaacgttct |
4951186 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgc |
122 |
Q |
| |
|
|| |||||| | |||||||||| |
|
|
| T |
4951185 |
cataatgttatgtctgatttgc |
4951164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 7784667 - 7784764
Alignment:
| Q |
13 |
gaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttctcagaatgttct |
111 |
Q |
| |
|
|||||||| ||||||||||| ||||||| |||| ||||||| ||| |||||||| |||||||||||| ||| || ||||| ||||| |||||||||| |
|
|
| T |
7784667 |
gaaaatagtgttgttggacatgtttttggcagctttccaaagcttcaattgatttcacttttcttcttt-aaacagacagaatgttcttagaatgttct |
7784764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 31306 - 31527
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31306 |
gtgaacaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttct |
31405 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccacta |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
31406 |
cagaatgttctttctgatttgcctggctttgaaagcactgttgctttgcttgcacatgagataaccagctgtaatgagctgtataacttgctgcccactt |
31505 |
T |
|
| Q |
201 |
ctgatgatgtcatgtccttttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
31506 |
ctgatgatgtcatgtccttttg |
31527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 9735 - 9555
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||| |||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||| ||||||||||| |||||||| |||||||||| |
|
|
| T |
9735 |
gtgatcaagggtgaaaatagagttgatggacacatttttgatagctgtccaaagtctcatttgttttcacttttcttcttaaaaatagctagaacgttct |
9636 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgt |
182 |
Q |
| |
|
||||||||||| |||||||||||| ||||| || ||||||| ||||||||| ||| | |||||||| ||||||||||| |
|
|
| T |
9635 |
cagaatgttctgtctgatttgcctagctttgcttgctctgttgc-ttgcttgcgagtgaaagaaccagctataatgagttgt |
9555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 94930 - 95151
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
94930 |
gtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttct |
95029 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccacta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| ||||||| |
|
|
| T |
95030 |
cagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccactt |
95129 |
T |
|
| Q |
201 |
ctgatgatgtcatgtccttttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
95130 |
ctgatgatgtcatgtccttttg |
95151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 104371 - 104592
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
104371 |
gtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttct |
104470 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccacta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| ||||||| |
|
|
| T |
104471 |
cagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccactt |
104570 |
T |
|
| Q |
201 |
ctgatgatgtcatgtccttttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
104571 |
ctgatgatgtcatgtccttttg |
104592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 7592695 - 7592474
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7592695 |
gtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttct |
7592596 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccacta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| ||||||| |
|
|
| T |
7592595 |
cagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccactt |
7592496 |
T |
|
| Q |
201 |
ctgatgatgtcatgtccttttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
7592495 |
ctgatgatgtcatgtccttttg |
7592474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 15173008 - 15172787
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15173008 |
gtgatcaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttct |
15172909 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccacta |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||| |||| |
|
|
| T |
15172908 |
cagaatgttctttctgatttgcctggctttgaaagcactgttgctttgcttgcgcatgagataaccagctataatgagctgtataacttgctgctcactt |
15172809 |
T |
|
| Q |
201 |
ctgatgatgtcatgtccttttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
15172808 |
ctgatgatgtcatgtccttttg |
15172787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 15202434 - 15202213
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15202434 |
gtgatcaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttct |
15202335 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccacta |
200 |
Q |
| |
|
||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
15202334 |
atgaatgttctttctgatttgtctggctttaaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtataacttgctgcccactt |
15202235 |
T |
|
| Q |
201 |
ctgatgatgtcatgtccttttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
15202234 |
ctgatgatgtcatgtccttttg |
15202213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4118923 - 4119144
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4118923 |
gtgatcaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccaaaacgttct |
4119022 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccacta |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| ||| |||| |
|
|
| T |
4119023 |
cagaatgttctttctgatttgcctggctttgaaagcactgttgctttgcttgcgcatgagataaccagctttaatgagctgtataacttgttgctcactt |
4119122 |
T |
|
| Q |
201 |
ctgatgatgtcatgtccttttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
4119123 |
ctgatgatgtcatgtccttttg |
4119144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 18420241 - 18420020
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18420241 |
gtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttct |
18420142 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccacta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| ||||||| |
|
|
| T |
18420141 |
cagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccactt |
18420042 |
T |
|
| Q |
201 |
ctgatgatgtcatgtccttttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
18420041 |
ctgatgatgtcatgtccttttg |
18420020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 23896115 - 23896336
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23896115 |
gtgatcaagggagaaaatagagctgttggacacgtttttgatagttgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttct |
23896214 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccacta |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
23896215 |
cagaatgttctttctgatttgcctggctttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgtataacttgctgcccactt |
23896314 |
T |
|
| Q |
201 |
ctgatgatgtcatgtccttttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
23896315 |
ctgatgatgtcatgtccttttg |
23896336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 14101868 - 14101770
Alignment:
| Q |
13 |
gaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttctcagaatgttct |
111 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||| ||| |||||||| ||||||||| |||||| | ||||||||||||||||||||| |
|
|
| T |
14101868 |
gaaaatagagttgttggatacgtttttggcagctgtccaaagcttcaattgatttcacttttcttcattaaaacgggaagaacgttctcagaatgttct |
14101770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 12173106 - 12173040
Alignment:
| Q |
13 |
gaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctt |
80 |
Q |
| |
|
||||||||||||||||| ||| ||||| |||| | |||||||| ||| |||||||| ||||||||||| |
|
|
| T |
12173106 |
gaaaatagagttgttgggcacattttt-atagatatccaaagtttcaattgatttcacttttcttctt |
12173040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 3242786 - 3243007
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3242786 |
gtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttct |
3242885 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccacta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| ||||||| |
|
|
| T |
3242886 |
cagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccactt |
3242985 |
T |
|
| Q |
201 |
ctgatgatgtcatgtccttttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
3242986 |
ctgatgatgtcatgtccttttg |
3243007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3917755 - 3917534
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3917755 |
gtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttct |
3917656 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccacta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| ||||||| |
|
|
| T |
3917655 |
cagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccactt |
3917556 |
T |
|
| Q |
201 |
ctgatgatgtcatgtccttttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
3917555 |
ctgatgatgtcatgtccttttg |
3917534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 26812197 - 26811976
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26812197 |
gtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttct |
26812098 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccacta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| ||||||| |
|
|
| T |
26812097 |
cagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccactt |
26811998 |
T |
|
| Q |
201 |
ctgatgatgtcatgtccttttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
26811997 |
ctgatgatgtcatgtccttttg |
26811976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 26821664 - 26821443
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26821664 |
gtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttct |
26821565 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccacta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| ||||||| |
|
|
| T |
26821564 |
cagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccactt |
26821465 |
T |
|
| Q |
201 |
ctgatgatgtcatgtccttttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
26821464 |
ctgatgatgtcatgtccttttg |
26821443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 54690412 - 54690633
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54690412 |
gtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttct |
54690511 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccacta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| ||||||| |
|
|
| T |
54690512 |
cagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccactt |
54690611 |
T |
|
| Q |
201 |
ctgatgatgtcatgtccttttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
54690612 |
ctgatgatgtcatgtccttttg |
54690633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 54699843 - 54700064
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54699843 |
gtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttct |
54699942 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccacta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| ||||||| |
|
|
| T |
54699943 |
cagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccactt |
54700042 |
T |
|
| Q |
201 |
ctgatgatgtcatgtccttttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
54700043 |
ctgatgatgtcatgtccttttg |
54700064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 37058776 - 37058555
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37058776 |
gtgatcaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttct |
37058677 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccacta |
200 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||| |||||||| |
|
|
| T |
37058676 |
caaaatgttctttctgatttgcctggctttgaaagcactgttgttttgcttgcgcatgagataaccagctgtaatgagctgtataactttgtgcccactt |
37058577 |
T |
|
| Q |
201 |
ctgatgatgtcatgtccttttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
37058576 |
ctgatgatgtcatgtccttttg |
37058555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 15843396 - 15843616
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15843396 |
gtgatcaagggagaaaatagagctgttggacacgttttttatagctgttcaaagtctcaattgatttctcttttcttctttaaaatagccataacgttct |
15843495 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccacta |
200 |
Q |
| |
|
|| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| | |||||||||| | |
|
|
| T |
15843496 |
cataatgttctttctgatttgcctggctttgaaagcactgttgc-ttgcttgcgcatgagataaccagctgtaatgagctgtataatttgctgcccaatg |
15843594 |
T |
|
| Q |
201 |
ctgatgatgtcatgtccttttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
15843595 |
ctgatgatgtcatgtccttttg |
15843616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 412987 - 412766
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
412987 |
gtgatcaagggagaaaatagagttgttggactcttttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttct |
412888 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccacta |
200 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
412887 |
cataatgttctttctgatttgtctgactttgaaagcactattgctttgcttgcacatgagataaccagctgtaatgagctgtataacttgctgcccactt |
412788 |
T |
|
| Q |
201 |
ctgatgatgtcatgtccttttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
412787 |
ctgatgatgtcatgtccttttg |
412766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0233 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: scaffold0233
Description:
Target: scaffold0233; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 26603 - 26823
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26603 |
gtgatcaagggagaaaatagagatgttggacacatttttgatagctatccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttct |
26702 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccacta |
200 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||| ||| |||||||||| ||| ||||||||||||| ||||| |||||||||||| | |
|
|
| T |
26703 |
cagaatgttctttctgatttgtctggctttgaaagcactgttgc-ttgtatgcgcatgagttaatcagctgtaatgagctgtataacttgctgcccaatg |
26801 |
T |
|
| Q |
201 |
ctgatgatgtcatgtccttttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
26802 |
ctgatgatgtcatgtccttttg |
26823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 24023240 - 24023460
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24023240 |
gtgatcaagggagaaaatagagttgttggacacgtttttgatagctatccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttct |
24023339 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccacta |
200 |
Q |
| |
|
|||||||||| ||||| |||||| |||||||||||||||||||||| ||||||| ||||| ||||| |||||||||| ||| | ||||| || || | |
|
|
| T |
24023340 |
tagaatgttctgtctgaattgccttactttgaaagcactgttgcttt-cttgcgcgtgagagaaccaactgtaatgagctgtttaacttgtcgctcaatt |
24023438 |
T |
|
| Q |
201 |
ctgatgatgtcatgtccttttg |
222 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
24023439 |
ctgatgaggtcatgtccttttg |
24023460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 14272745 - 14272565
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||| | |
|
|
| T |
14272745 |
gtgatcaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttctacttataaatagccagaacgtttt |
14272646 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgt |
182 |
Q |
| |
|
||||||||||| ||||| |||||| |||||||||||| |||||| ||||||||| | || ||||| |||||||||||||| |
|
|
| T |
14272645 |
cagaatgttctgtctgaattgcctaactttgaaagcattgttgc-ttgcttgcgagggggagaaccaactgtaatgagttgt |
14272565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 31710964 - 31711173
Alignment:
| Q |
1 |
gtgaccaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttct |
100 |
Q |
| |
|
|||| |||| ||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
31710964 |
gtgatcaagtgagaaaatagagttgttggacgcgtttttgatagttgtccaaagtctcaattgatttctcttttcttcttaaaaatagc----------- |
31711052 |
T |
|
| Q |
101 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccacta |
200 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||| |||||||||| ||||| |||||| ||||||||| ||||| ||||| |||||| | |
|
|
| T |
31711053 |
cagaatgttctttctgattttcctggctttgaaagcactgttgc-ttgcttgcgcgtgagagaaccagttgtaatgagctgtataacttgttgcccaatg |
31711151 |
T |
|
| Q |
201 |
ctgatgatgtcatgtccttttg |
222 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
31711152 |
ctgatgatgtcatgtccctttg |
31711173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 15810493 - 15810699
Alignment:
| Q |
15 |
aaatagagttgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttctcagaatgttctttc |
114 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| | |||||||| |||||||||| ||||||| ||||| | |||||||||||| | || |
|
|
| T |
15810493 |
aaatagagttgttggacacatttttgatagctgtccaaagtcctaattgatttcatttttcttcttaaaaatagacagaatgatctcagaatgttatgtc |
15810592 |
T |
|
| Q |
115 |
tgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttgtatgacttgctgcccactactgatgatgtcatg |
214 |
Q |
| |
|
|||||||| | |||||| |||||||||| ||||||||| ||||| |||||||||||||||| ||| | ||||| ||| || | ||||| |||||||| |
|
|
| T |
15810593 |
tgatttgcataactttgcttgcactgttgc-ttgcttgcgagtgagagaaccagctgtaatgagctgttttacttgttgctcaattctgattatgtcatg |
15810691 |
T |
|
| Q |
215 |
tccttttg |
222 |
Q |
| |
|
|||||||| |
|
|
| T |
15810692 |
tccttttg |
15810699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 41000888 - 41001003
Alignment:
| Q |
13 |
gaaaatagagttgttggacacgtttttg---atagctgtccaaagtctcatttgatttctcttttcttctttaaaatagccagaacgttctcagaatgtt |
109 |
Q |
| |
|
|||||||||| |||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||| ||| | | ||||| | |||||||||||| |
|
|
| T |
41000888 |
gaaaatagagatgttggacacgtttttttttatagatgtccaaagtctcatttgatttcacttttcttcttaaaattgggcagaaagatctcagaatgtt |
41000987 |
T |
|
| Q |
110 |
ctttctgatttgcctg |
125 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
41000988 |
atgtctgatttgcctg |
41001003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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