View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10261A_low_420 (Length: 225)
Name: NF10261A_low_420
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_420 |
 | |
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| [»] scaffold0002 (1 HSPs) |
| | |
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| [»] scaffold0925 (1 HSPs) |
| | |
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| [»] scaffold0003 (1 HSPs) |
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| [»] scaffold0116 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 393684 - 393906
Alignment:
| Q |
1 |
ggtgttacgagtaccttcagccgggaagcaatccccaactattgataggcgtttgaaacacaagtgccctcgataggtcctcaaagtaaccaaaccataa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
393684 |
ggtgttacgagtaccttcagccgggaagcaatccccaactattgataggcgttcgaaacacaagtgccctcaatagatcctcaaagtaaccaaaccataa |
393783 |
T |
|
| Q |
101 |
ctatcctcattcccatctacacctgagtgtatatggacctgttatagctccttaattgtccctactttctagacaagacaaaacactcagactcaactca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
393784 |
ctatcctcattcccatctacacctgagtgtatatggacctgttatagctccttaattgtccctactttctagacaagacaaaacactcagactcaactca |
393883 |
T |
|
| Q |
201 |
acaatgtcaaacaattaaccatt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
393884 |
acaatgtcaaacaattaaccatt |
393906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 6 - 223
Target Start/End: Original strand, 21621459 - 21621676
Alignment:
| Q |
6 |
tacgagtaccttcagccgggaagcaatccccaactattgataggcgtttgaaacacaagtgccctcgataggtcctcaaagtaaccaaaccataactatc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21621459 |
tacgagtaccttcagccgggaagcaatccccaactattgataggcgttcgaaacacaagtgccctcgataggtcctcaaagtaaccaaaccataactatc |
21621558 |
T |
|
| Q |
106 |
ctcattcccatctacacctgagtgtatatggacctgttatagctccttaattgtccctactttctagacaagacaaaacactcagactcaactcaacaat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| |||||| |||||||| |
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|
| T |
21621559 |
ctcattcccatctacacctgagtgtatagggacctattatagctccttaattgtccctccttcctagacaagacaaaacactcatactcaattcaacaat |
21621658 |
T |
|
| Q |
206 |
gtcaaacaattaaccatt |
223 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
21621659 |
gtcaaacaattaaccatt |
21621676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 6 - 223
Target Start/End: Original strand, 21628918 - 21629135
Alignment:
| Q |
6 |
tacgagtaccttcagccgggaagcaatccccaactattgataggcgtttgaaacacaagtgccctcgataggtcctcaaagtaaccaaaccataactatc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21628918 |
tacgagtaccttcagccgggaagcaatccccaactattgataggcgttcgaaacacaagtgccctcgataggtcctcaaagtaaccaaaccataactatc |
21629017 |
T |
|
| Q |
106 |
ctcattcccatctacacctgagtgtatatggacctgttatagctccttaattgtccctactttctagacaagacaaaacactcagactcaactcaacaat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| |||||| |||||||| |
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|
| T |
21629018 |
ctcattcccatctacacctgagtgtatagggacctattatagctccttaattgtccctccttcctagacaagacaaaacactcatactcaattcaacaat |
21629117 |
T |
|
| Q |
206 |
gtcaaacaattaaccatt |
223 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
21629118 |
gtcaaacaattaaccatt |
21629135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 97 - 223
Target Start/End: Original strand, 21184387 - 21184508
Alignment:
| Q |
97 |
ataactatcctcattcccatctacacctgagtgtatatggacctgttatagctccttaattgtccctactttctagacaagacaaaacactcagactcaa |
196 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||| | |
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|
| T |
21184387 |
ataagtatcctcattcccatctacacctgagtgtatagggacctgttatagctccttaattgtccctactttttagacaagataaaacactca-----ta |
21184481 |
T |
|
| Q |
197 |
ctcaacaatgtcaaacaattaaccatt |
223 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
21184482 |
ctcaacaatgtcaaacaattaaccatt |
21184508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 6 - 223
Target Start/End: Complemental strand, 10233460 - 10233243
Alignment:
| Q |
6 |
tacgagtaccttcagccgggaagcaatccccaactattgataggcgtttgaaacacaagtgccctcgataggtcctcaaagtaaccaaaccataactatc |
105 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10233460 |
tacgagtactttcagccgggaagcaatccccaactattgataggcgttcgaaacacaagtgccctcgatagatcctcaaagtaaccaaaccataactatc |
10233361 |
T |
|
| Q |
106 |
ctcattcccatctacacctgagtgtatatggacctgttatagctccttaattgtccctactttctagacaagacaaaacactcagactcaactcaacaat |
205 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
10233360 |
ctcattctcatctacacctgagtgtatagggacctgttatagctccttaattgtccctactttctagacaagacaaaacactcatattcaactcaacaat |
10233261 |
T |
|
| Q |
206 |
gtcaaacaattaaccatt |
223 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
10233260 |
gtcaaacaattaaccatt |
10233243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0925 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: scaffold0925
Description:
Target: scaffold0925; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 6 - 223
Target Start/End: Complemental strand, 1203 - 985
Alignment:
| Q |
6 |
tacgagtaccttcagccgggaagcaatccccaactattgataggcgtttgaaacacaagtgccctcgataggtcctcaaagtaaccaaaccataactatc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1203 |
tacgagtaccttcagccgggaagcaatcgccaactattgataggcattcgaaacacaagtgccctcgataggtcctcaaagtaatcaaaccataactatc |
1104 |
T |
|
| Q |
106 |
ctcattcccatctacacctgagtgtatatggacctgttatagctccttaattgtccctactttctagacaagacaaaacactcagactcaactcaacaa- |
204 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||| ||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
1103 |
ctcattcccatctacacctgaatgtatagggacctgttatacctccttaattgtccctgctttctagataagacaaaacactcgtactcaactcaacaat |
1004 |
T |
|
| Q |
205 |
tgtcaaacaattaaccatt |
223 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
1003 |
tgtcaaacaattaaccatt |
985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 6 - 223
Target Start/End: Original strand, 22388298 - 22388516
Alignment:
| Q |
6 |
tacgagtaccttcagccgggaagcaatccccaactattgataggcgtttgaaacacaagtgccctcgataggtcctcaaagtaaccaaaccataactatc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
22388298 |
tacgagtaccttcagccgggaagcaatcgccaactattgataggcattcgaaacacaagtgccctcgataggtcctcaaagtaatcaaaccataactatc |
22388397 |
T |
|
| Q |
106 |
ctcattcccatctacacctgagtgtatatggacctgttatagctccttaattgtccctactttctagacaagacaaaacactcagactcaactcaacaa- |
204 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||| ||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
22388398 |
ctcattcccatctacacctgaatgtatagggacctgttatacctccttaattgtccctgctttctagataagacaaaacactcgtactcaactcaacaat |
22388497 |
T |
|
| Q |
205 |
tgtcaaacaattaaccatt |
223 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
22388498 |
tgtcaaacaattaaccatt |
22388516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 7646581 - 7646646
Alignment:
| Q |
122 |
cctgagtgtatatggacctgttatagctccttaattgtccctactttctagacaagacaaaacact |
187 |
Q |
| |
|
|||||| ||||| ||| || |||||||||| ||||||||||| || |||||||||||||||||| |
|
|
| T |
7646581 |
cctgagagtatagagacatggtatagctcctcaattgtccctatttaatagacaagacaaaacact |
7646646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 19240615 - 19240814
Alignment:
| Q |
1 |
ggtgttacgagtaccttcagccgggaagcaatccccaactattgataggcgtttgaaacacaagtgccctcgataggtcctcaaagtaaccaaaccataa |
100 |
Q |
| |
|
|||| ||||||||||||||||| |||| |||||| ||||||||||||| || ||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19240615 |
ggtggtacgagtaccttcagcctagaagtaatcccatactattgataggcattcgaaacacaaatgccctcgataggtcttcaaagtaaccaaaccataa |
19240714 |
T |
|
| Q |
101 |
ctatcctcattcccatctacacctgagtgtatatggacctgttatagctccttaattgtccctactttctagacaagacaaaacactcagactcaactca |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
19240715 |
atatcgtcattcccatctacacctgagtgtacatggacaagttatagctccttaattgtccctactttctagacaagataaaacactcatactcaactca |
19240814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 6 - 141
Target Start/End: Complemental strand, 141125 - 140990
Alignment:
| Q |
6 |
tacgagtaccttcagccgggaagcaatccccaactattgataggcgtttgaaacacaagtgccctcgataggtcctcaaagtaaccaaaccataactatc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
141125 |
tacgagtaccttcagccgggaagcaatccccaactattgataggcgttcgaaacacaagttccctcgataggtcctcaaagtaaccaaaccataactatc |
141026 |
T |
|
| Q |
106 |
ctcattcccatctacacctgagtgtatatggacctg |
141 |
Q |
| |
|
||||||||| |||||| ||||||||||| ||||||| |
|
|
| T |
141025 |
ctcattcccgtctacatctgagtgtatagggacctg |
140990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0116 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0116
Description:
Target: scaffold0116; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 137 - 223
Target Start/End: Complemental strand, 33453 - 33366
Alignment:
| Q |
137 |
acctgttatagctccttaattgtccctactttctagacaagacaaaacactcagactcaactcaacaa-tgtcaaacaattaaccatt |
223 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||| |
|
|
| T |
33453 |
acctgctatagctccttaattggccctactttctagacaagacaaaacactcatactcaactcaacaattgtcaaacaattagccatt |
33366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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