View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_425 (Length: 224)
Name: NF10261A_low_425
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_425 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 21 - 204
Target Start/End: Complemental strand, 2442879 - 2442696
Alignment:
| Q |
21 |
tatgagtttgttaaccttgtttttgtttcaagttcatctcactgacactgtttaccagaaattgatcgagggctcctctatattaccattttacaatgca |
120 |
Q |
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| T |
2442879 |
tatgagtttgttaaccttgtttttgtttcaagttcatcacactaacactgtttaccagaaattgatcgagggcttctttatattaccattttacaatcaa |
2442780 |
T |
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| Q |
121 |
attctagaaattttgtatcattctatcgcatgcagagcaagatagtctgaaaatggttgcaaaaagagaagctagagttcggtc |
204 |
Q |
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| T |
2442779 |
tttatacaaattttgtatcattctatcgcacgcagagcaagatagtctgaaaatggttgcaaaaagagaagctagagttcggtc |
2442696 |
T |
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Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 35 - 167
Target Start/End: Original strand, 50984196 - 50984328
Alignment:
| Q |
35 |
ccttgtttttgtttcaagttcatctcactgacactgt--ttaccagaaattgatcgagggctcctctatattaccattttacaatgcaattctagaaatt |
132 |
Q |
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| T |
50984196 |
ccttgattttgtttcaacttcatctcactgaaactgtgttttctagaaattgattgagggcttctctatattaccatttt-caat-caattctacaaatt |
50984293 |
T |
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| Q |
133 |
ttgtatcattctatcgcatgcagagcaagatagtc |
167 |
Q |
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| T |
50984294 |
ttgttttaatctgtcacatgcagagcaagatagtc |
50984328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 34019916 - 34019952
Alignment:
| Q |
155 |
gagcaagatagtctgaaaatggttgcaaaaagagaag |
191 |
Q |
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| T |
34019916 |
gagcaagatagtctgaaaatggttgcaaaaagagaag |
34019952 |
T |
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