View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261A_low_428 (Length: 223)

Name: NF10261A_low_428
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261A_low_428
NF10261A_low_428
[»] chr4 (14 HSPs)
chr4 (1-217)||(36630456-36630672)
chr4 (1-196)||(36642327-36642519)
chr4 (76-216)||(36635739-36635879)
chr4 (67-216)||(35969461-35969610)
chr4 (1-197)||(36910715-36910914)
chr4 (53-191)||(18361188-18361326)
chr4 (67-191)||(36601616-36601741)
chr4 (53-193)||(18084221-18084361)
chr4 (53-193)||(36664648-36664788)
chr4 (53-109)||(18365469-18365525)
chr4 (53-109)||(36597399-36597455)
chr4 (2-41)||(36635661-36635700)
chr4 (154-196)||(18365382-18365424)
chr4 (154-196)||(36597500-36597542)
[»] chr8 (1 HSPs)
chr8 (72-196)||(35336923-35337047)
[»] chr1 (1 HSPs)
chr1 (72-216)||(42601686-42601830)
[»] chr6 (1 HSPs)
chr6 (163-216)||(33839177-33839230)


Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 36630672 - 36630456
Alignment:
Q  1 ttcttatggctgtttcatttaaaattatctaagcttagattgtcnnnnnnntaattaccacacttggctcccttatgatttttaaataactacctgctta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36630672 ttcttatggctgtttcatttaaaattatctaagcttagattgtcaaaaaaataattaccacacttggctcccttatgacttttaaataactacctgctta 36630573  T
Q  101 agattaaaacaacctgggtaatttgttatgatgttaacttcagccgacgatgggttttgtcacaagaagtcaactattccatcaggtatggcaggtaatt 200  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36630572 agattaaaacaacctgggtaatctgttgtgatgttaacttcagccgacgacgggttttgtcgcaagaagtcaactattccatcaggtatggcaggtaatt 36630473  T
Q  201 ctaaacctgctttaaac 217  Q
    |||||||||||||||||    
T  36630472 ctaaacctgctttaaac 36630456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 36642327 - 36642519
Alignment:
Q  1 ttcttatggctgtttcatttaaaattatctaagcttagattgtcnnnnnnntaattaccacacttggctcccttatgatttttaaataactacctgctta 100  Q
    ||||||||| |||||||||| ||| |||||||||| ||||| ||        ||||||||||||  |||||||||||  ||||||||||| |||||||||    
T  36642327 ttcttatggttgtttcatttgaaactatctaagctgagattctcaaaag---aattaccacactcagctcccttatggattttaaataacaacctgctta 36642423  T
Q  101 agattaaaacaacctgggtaatttgttatgatgttaacttcagccgacgatgggttttgtcacaagaagtcaactattccatcaggtatggcaggt 196  Q
    |||||||||||| | | ||||| ||| | |||||||||||| || |||| || |||||||| ||||||||| |||||||||| |||||||||||||    
T  36642424 agattaaaacaatccgagtaatctgtaaagatgttaacttccgcagacggtgagttttgtcgcaagaagtctactattccattaggtatggcaggt 36642519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 76 - 216
Target Start/End: Original strand, 36635739 - 36635879
Alignment:
Q  76 tgatttttaaataactacctgcttaagattaaaacaacctgggtaatttgttatgatgttaacttcagccgacgatgggttttgtcacaagaagtcaact 175  Q
    |||||| |||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||| || ||    | |||||| | |||||| ||||||    
T  36635739 tgatttataaataactacctgcttaagattaaaacaagccgggtaatttgttgtgatgttaacttcggcggattgcgagttttgacgcaagaattcaact 36635838  T
Q  176 attccatcaggtatggcaggtaattctaaacctgctttaaa 216  Q
    |||||||||||||||| ||||  ||| |||| |||||||||    
T  36635839 attccatcaggtatgggaggtggttccaaacgtgctttaaa 36635879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 35969610 - 35969461
Alignment:
Q  67 gctcccttatgatttttaaataactacctgcttaagattaaaacaacctgggtaatttgttatgatgttaacttcagccgacgatgggttttgtcacaag 166  Q
    |||| |||||| |||| |||||||||||| ||||||||||||||||  || |||| |||||| |||||||||||| |||  || || |||||||| ||||    
T  35969610 gctcacttatggttttcaaataactacctccttaagattaaaacaatttgagtaaattgttaggatgttaacttccgccagcggtgagttttgtcgcaag 35969511  T
Q  167 aagtcaactattccatcaggtatggcaggtaattctaaacctgctttaaa 216  Q
    || |||||||||||||| ||||||| |||   ||| ||||||||||||||    
T  35969510 aaatcaactattccatctggtatgggaggaggttccaaacctgctttaaa 35969461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 36910914 - 36910715
Alignment:
Q  1 ttcttatggctgtttcatttaaaattatctaagcttagattgtcnnnnnnntaattaccacacttggctcccttatgatttttaaataacta----cctg 96  Q
    ||||||||| ||| ||||||||||||||||||||| ||||| ||        ||||| ||||||  |||||| |||| ||||||||||||||    ||||    
T  36910914 ttcttatggttgtgtcatttaaaattatctaagctcagattctcaacaaaa-aattaacacactcagctcccatatggtttttaaataactagctacctg 36910816  T
Q  97 cttaagattaaaacaacctgggtaatttgttatgatgttaacttcagccgacgatgggttttgtcacaagaagtcaactattccatcaggtatggcaggt 196  Q
    ||||||||||||| ||     ||||| |||| ||||||||||||| || || |  | |||||||| ||||||||||||||||||||||||||||||||||    
T  36910815 cttaagattaaaataaataaagtaatctgttgtgatgttaacttccgctgagggcgagttttgtcgcaagaagtcaactattccatcaggtatggcaggt 36910716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 53 - 191
Target Start/End: Complemental strand, 18361326 - 18361188
Alignment:
Q  53 aattaccacacttggctcccttatgatttttaaataactacctgcttaagattaaaacaacctgggtaatttgttatgatgttaacttcagccgacgatg 152  Q
    ||||| ||||||  ||||||||||| |||| |||||||||| |||||||||||||| |||   |  |||| ||||| |||||||||||  |||| || ||    
T  18361326 aattaacacactcagctcccttatggttttcaaataactacttgcttaagattaaatcaattcgaataatctgttaagatgttaactttggccgtcggtg 18361227  T
Q  153 ggttttgtcacaagaagtcaactattccatcaggtatgg 191  Q
      |||| |  |||||||||||||||||||||||||||||    
T  18361226 aatttttttgcaagaagtcaactattccatcaggtatgg 18361188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 191
Target Start/End: Original strand, 36601616 - 36601741
Alignment:
Q  67 gctcccttatgatttttaaataactacctgcttaagattaaaacaacctgggtaatttgttatgatgttaacttcagccgacgatg-ggttttgtcacaa 165  Q
    ||||||||||| |||| |||||||||| |||||||||||||| |||   |  |||| ||||| |||||||||||  |||| || ||   |||| |  |||    
T  36601616 gctcccttatggttttcaaataactacttgcttaagattaaatcaattcgaataatctgttaagatgttaactttggccgtcggtgaattttttttgcaa 36601715  T
Q  166 gaagtcaactattccatcaggtatgg 191  Q
    ||||||||||||||||||||||||||    
T  36601716 gaagtcaactattccatcaggtatgg 36601741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 193
Target Start/End: Complemental strand, 18084361 - 18084221
Alignment:
Q  53 aattaccacacttggctcccttatgatttttaaataactacctgcttaaga-ttaaaacaacctgggtaatttgttatgatgttaacttcagccgacgat 151  Q
    |||||||||||   ||||||||| |||||||||||| ||||||||||| || ||||||||  | | | ||| |||  ||||||||||||| || || |      
T  18084361 aattaccacacacagctcccttaagatttttaaatacctacctgcttaggatttaaaacatgc-gagaaatctgtggtgatgttaacttccgctgatggc 18084263  T
Q  152 gggttttgtcacaagaagtcaactattccatcaggtatggca 193  Q
    | |||||||| |||||||||||| || || ||||||||||||    
T  18084262 gagttttgtcgcaagaagtcaaccataccgtcaggtatggca 18084221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 193
Target Start/End: Original strand, 36664648 - 36664788
Alignment:
Q  53 aattaccacacttggctcccttatgatttttaaataactacctgcttaaga-ttaaaacaacctgggtaatttgttatgatgttaacttcagccgacgat 151  Q
    |||||||||||   ||||||||| |||||||||||| ||||||||||| || ||||||||  | | | ||| |||  ||||||||||||| || || |      
T  36664648 aattaccacacacagctcccttaagatttttaaatacctacctgcttaggatttaaaacatgc-gagaaatctgtggtgatgttaacttccgctgatggc 36664746  T
Q  152 gggttttgtcacaagaagtcaactattccatcaggtatggca 193  Q
    | |||||||| |||||||||||| || || ||||||||||||    
T  36664747 gagttttgtcgcaagaagtcaaccataccgtcaggtatggca 36664788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 18365525 - 18365469
Alignment:
Q  53 aattaccacacttggctcccttatgatttttaaataactacctgcttaagattaaaa 109  Q
    |||||||||||| || | ||||||| ||||||||||||||||||||| | |||||||    
T  18365525 aattaccacactcggttaccttatggtttttaaataactacctgcttgatattaaaa 18365469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 36597399 - 36597455
Alignment:
Q  53 aattaccacacttggctcccttatgatttttaaataactacctgcttaagattaaaa 109  Q
    |||||||||||| || | ||||||| ||||||||||||||||||||| | |||||||    
T  36597399 aattaccacactcggttaccttatggtttttaaataactacctgcttgatattaaaa 36597455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 36635661 - 36635700
Alignment:
Q  2 tcttatggctgtttcatttaaaattatctaagcttagatt 41  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  36635661 tcttatcgttgtttcatttaaaattatctaagcttagatt 36635700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 18365424 - 18365382
Alignment:
Q  154 gttttgtcacaagaagtcaactattccatcaggtatggcaggt 196  Q
    |||||||| || |||||||||||||||||||||||||| ||||    
T  18365424 gttttgtcgcaggaagtcaactattccatcaggtatgggaggt 18365382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 36597500 - 36597542
Alignment:
Q  154 gttttgtcacaagaagtcaactattccatcaggtatggcaggt 196  Q
    |||||||| || |||||||||||||||||||||||||| ||||    
T  36597500 gttttgtcgcaggaagtcaactattccatcaggtatgggaggt 36597542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 72 - 196
Target Start/End: Complemental strand, 35337047 - 35336923
Alignment:
Q  72 cttatgatttttaaataactacctgcttaagattaaaacaacctgggtaatttgttatgatgttaacttcagccgacgatgggttttgtcacaagaagtc 171  Q
    |||||| |||||||| |||||||||||||| ||||||| |||| | ||| |||||| ||||||||||||  ||||||| || |||||||  |||||||||    
T  35337047 cttatggtttttaaacaactacctgcttaatattaaaataacccgtgtactttgttgtgatgttaactttcgccgacggtgagttttgttgcaagaagtc 35336948  T
Q  172 aactattccatcaggtatggcaggt 196  Q
    |||||||||||||||||||| ||||    
T  35336947 aactattccatcaggtatgggaggt 35336923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 72 - 216
Target Start/End: Original strand, 42601686 - 42601830
Alignment:
Q  72 cttatgatttttaaataactacctgcttaagattaaaacaacctgggtaatttgttatgatgttaacttcagccgacgatgggttttgtcacaagaagtc 171  Q
    |||||| |||||||||||||||||||||||||| |||| |||  ||||||| ||||| ||| ||||||||  ||||||    |||||||| |||||| ||    
T  42601686 cttatggtttttaaataactacctgcttaagatcaaaagaactcgggtaatctgttaagattttaacttccaccgacggcaagttttgtcgcaagaaatc 42601785  T
Q  172 aactattccatcaggtatggcaggtaattctaaacctgctttaaa 216  Q
    |||||||||||| ||||||| ||||  || |||||| ||||||||    
T  42601786 aactattccatcgggtatgggaggtggttttaaacccgctttaaa 42601830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 33839177 - 33839230
Alignment:
Q  163 caagaagtcaactattccatcaggtatggcaggtaattctaaacctgctttaaa 216  Q
    ||||||||| ||||||||||||||||||| ||||  ||||||||| ||||||||    
T  33839177 caagaagtccactattccatcaggtatggaaggtggttctaaacccgctttaaa 33839230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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