View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10261A_low_433 (Length: 222)
Name: NF10261A_low_433
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_433 |
 | |
|
| [»] scaffold0035 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 5831861 - 5832045
Alignment:
| Q |
17 |
atgaactgataccaccctagagtcaagaagttccattataggagtgaaactcacgcacctaggaactttatactgattgatacttgcaccacgcgatatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5831861 |
atgaactgataccaccctagagtcaagaagttccattataggagtgaaactcacgcacctaggaactttatactgattgatacttgcaccacgcgatatt |
5831960 |
T |
|
| Q |
117 |
gcataatccattagttcctcaaacgtgccatttttcaccacacaaatctctaatggcccaattgaattatcagcaactcttcctt |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5831961 |
gcataatccattagttcctcaaacgtgccatttttcaccacacgaatctctaatggcccaattgaattatcagcaactcttcctt |
5832045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 34 - 201
Target Start/End: Complemental strand, 5824161 - 5823994
Alignment:
| Q |
34 |
tagagtcaagaagttccattataggagtgaaactcacgcacctaggaactttatactgattgatacttgcaccacgcgatattgcataatccattagttc |
133 |
Q |
| |
|
|||||||||||||||||| || ||| |||| |||||||||||||||||||||||| ||||| || |||||||| |||||| ||||||||| | || |
|
|
| T |
5824161 |
tagagtcaagaagttccactacaggtgtgagactcacgcacctaggaactttatattgattaatcgatgcaccacacgatatataataatccatcaaatc |
5824062 |
T |
|
| Q |
134 |
ctcaaacgtgccatttttcaccacacaaatctctaatggcccaattgaattatcagcaactcttcctt |
201 |
Q |
| |
|
||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5824061 |
ctcgaatgtgccatttttcaccacacgaatctctaatggcccaattgaattatcagcaactcttcctt |
5823994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 78938 - 78763
Alignment:
| Q |
18 |
tgaactgataccaccctagagtcaagaagttccattataggagtgaaactcacgcacctaggaactttatactgattgatacttgcaccacgcgatattg |
117 |
Q |
| |
|
||||| || |||||||||||||| | ||| |||||||||||||| ||| | || ||||| ||||||||||| ||||| || ||||| | || |||| |
|
|
| T |
78938 |
tgaacagagaccaccctagagtccaaaagctccattataggagtaaaattaacacaccttggaactttatattgatttattgaagcacctcttgagattg |
78839 |
T |
|
| Q |
118 |
cataatccattagttcctcaaacgtgccatttttcaccacacaaatctctaatggcccaattgaattatcagcaac |
193 |
Q |
| |
|
|||||||||| || |||||||| || ||| | ||||| || | ||||| ||||| |||||||||| ||||||||| |
|
|
| T |
78838 |
cataatccataagctcctcaaaagttccactcttcacaacccttatctccaatggtccaattgaatgatcagcaac |
78763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University