View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261A_low_438 (Length: 221)

Name: NF10261A_low_438
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261A_low_438
NF10261A_low_438
[»] chr2 (3 HSPs)
chr2 (1-221)||(40062890-40063110)
chr2 (1-221)||(40093521-40093741)
chr2 (1-221)||(40081240-40081461)


Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 40062890 - 40063110
Alignment:
Q  1 atttaggtctttccagtggaagttccgaaggttggaactcacagtctactttccctaagaatcaaccattgatttggtacaaggtaattttattttcaat 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40062890 atttaggtctgtccagtggaagttccgaaggttggaactcacagtctactttccctaagaatcaaccattgatttggtacaaggtaattttattttcaat 40062989  T
Q  101 ttattgtttccctttatataagttatggaatttcaaattaaaagaatgccactatatgaaaaatgttttttggtactaaccaatgtcatacatgttgcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40062990 ttattgtttccctttatataagttatggaatttcaaattaaaagaatgccactatatgaaaaatgttttttggtactaaccaatgtcatacatgttgcat 40063089  T
Q  201 tagacaaactttgatgctcca 221  Q
    |||||||||||||||||||||    
T  40063090 tagacaaactttgatgctcca 40063110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 40093521 - 40093741
Alignment:
Q  1 atttaggtctttccagtggaagttccgaaggttggaactcacagtctactttccctaagaatcaaccattgatttggtacaaggtaattttattttcaat 100  Q
    |||||||||| || ||||||||||||| ||  ||||| ||| || |||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  40093521 atttaggtctctctagtggaagttccggagcgtggaattcaaagactactttccctaagaaacaaccattgatttggtacaaggtaatttaattttcaat 40093620  T
Q  101 ttattgtttccctttatataagttatggaatttcaaattaaaagaatgccactatatgaaaaatgttttttggtactaaccaatgtcatacatgttgcat 200  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  40093621 ttattgtttcccttgatataagttatggaatttcaaattaaaagaacgccactatatgaaaaatgttttttgctactaaccaatgtcatgcatgttgcat 40093720  T
Q  201 tagacaaactttgatgctcca 221  Q
    |||||||||||||||||||||    
T  40093721 tagacaaactttgatgctcca 40093741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 40081240 - 40081461
Alignment:
Q  1 atttaggtctttccagtggaagttccgaaggttggaactcacagtctactttccctaagaatcaaccattgatttggtacaaggtaattttattttcaat 100  Q
    |||||||||| || ||||||||||| | ||| ||||| ||||||||||||| ||||||||| ||||||||| |||||||||||||| |||||||||||||    
T  40081240 atttaggtctgtctagtggaagttctggagggtggaattcacagtctacttaccctaagaaccaaccattggtttggtacaaggtagttttattttcaat 40081339  T
Q  101 ttattgtttccctttatataagttatggaatttcaaattaaaagaatgccactatatgaaaaatg-ttttttggtactaaccaatgtcatacatgttgca 199  Q
    |||||||||||||| |||||||| | |||||||||||||||   ||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||    
T  40081340 ttattgtttcccttgatataagtaagggaatttcaaattaaggaaatgccactatatgaaaaatgtttttttgctactaaccaatgtaatacatgttgca 40081439  T
Q  200 ttagacaaactttgatgctcca 221  Q
     |||||||||||||||||||||    
T  40081440 ctagacaaactttgatgctcca 40081461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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