View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261A_low_439 (Length: 221)

Name: NF10261A_low_439
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261A_low_439
NF10261A_low_439
[»] chr1 (12 HSPs)
chr1 (181-221)||(6833442-6833482)
chr1 (180-216)||(25262987-25263023)
chr1 (181-216)||(45496202-45496237)
chr1 (17-62)||(6833209-6833254)
chr1 (181-214)||(17903843-17903876)
chr1 (181-221)||(7321698-7321738)
chr1 (181-221)||(50543827-50543867)
chr1 (181-216)||(12710093-12710128)
chr1 (180-211)||(39060318-39060349)
chr1 (180-214)||(14793278-14793312)
chr1 (181-214)||(24720611-24720644)
chr1 (181-214)||(28477562-28477595)
[»] scaffold0051 (2 HSPs)
scaffold0051 (7-62)||(64996-65051)
scaffold0051 (181-221)||(64815-64855)
[»] chr8 (14 HSPs)
chr8 (7-62)||(6574028-6574083)
chr8 (180-221)||(6573865-6573906)
chr8 (181-221)||(22207407-22207447)
chr8 (181-216)||(22473761-22473796)
chr8 (181-214)||(18815728-18815761)
chr8 (181-221)||(18819641-18819681)
chr8 (7-61)||(5079974-5080027)
chr8 (180-214)||(38988525-38988559)
chr8 (180-214)||(39019622-39019656)
chr8 (181-214)||(17979271-17979304)
chr8 (181-214)||(21513505-21513538)
chr8 (180-221)||(36405832-36405873)
chr8 (64-92)||(6573985-6574013)
chr8 (181-221)||(36733414-36733454)
[»] chr6 (5 HSPs)
chr6 (184-221)||(29044429-29044466)
chr6 (181-214)||(19957753-19957786)
chr6 (181-216)||(19234550-19234585)
chr6 (181-214)||(21686558-21686591)
chr6 (183-216)||(30674231-30674264)
[»] chr5 (13 HSPs)
chr5 (180-221)||(16062617-16062658)
chr5 (181-216)||(22110953-22110988)
chr5 (180-214)||(16605269-16605303)
chr5 (181-221)||(8834007-8834047)
chr5 (7-62)||(16062434-16062490)
chr5 (181-221)||(20198556-20198596)
chr5 (7-62)||(21401940-21401996)
chr5 (181-216)||(21401796-21401831)
chr5 (181-214)||(660158-660191)
chr5 (181-210)||(19076444-19076473)
chr5 (181-221)||(1628281-1628321)
chr5 (64-92)||(8834136-8834164)
chr5 (181-221)||(14026718-14026758)
[»] chr7 (10 HSPs)
chr7 (180-216)||(48213750-48213786)
chr7 (181-214)||(15576839-15576872)
chr7 (181-221)||(15120094-15120134)
chr7 (181-216)||(24270645-24270680)
chr7 (181-214)||(16251326-16251359)
chr7 (181-213)||(4691653-4691685)
chr7 (7-62)||(11314153-11314209)
chr7 (7-62)||(13746011-13746067)
chr7 (7-62)||(13746099-13746155)
chr7 (186-214)||(20253389-20253417)
[»] scaffold0505 (2 HSPs)
scaffold0505 (181-216)||(1878-1913)
scaffold0505 (181-216)||(3898-3933)
[»] scaffold0004 (5 HSPs)
scaffold0004 (7-62)||(67177-67232)
scaffold0004 (7-62)||(67220-67275)
scaffold0004 (181-221)||(66918-66958)
scaffold0004 (7-63)||(67131-67189)
scaffold0004 (180-216)||(74725-74760)
[»] chr2 (12 HSPs)
chr2 (7-62)||(45679461-45679516)
chr2 (183-221)||(21336527-21336565)
chr2 (181-214)||(1384556-1384589)
chr2 (181-221)||(21316634-21316674)
chr2 (18-62)||(25085472-25085516)
chr2 (181-221)||(25085645-25085685)
chr2 (7-62)||(45679504-45679560)
chr2 (183-213)||(25587561-25587591)
chr2 (7-63)||(22685722-22685779)
chr2 (181-210)||(37379525-37379554)
chr2 (64-92)||(25085531-25085559)
chr2 (7-62)||(45679394-45679450)
[»] scaffold0577 (1 HSPs)
scaffold0577 (180-214)||(7915-7949)
[»] scaffold0371 (2 HSPs)
scaffold0371 (181-219)||(11132-11170)
scaffold0371 (64-92)||(11250-11278)
[»] chr3 (13 HSPs)
chr3 (180-214)||(15565749-15565783)
chr3 (7-57)||(53646911-53646961)
chr3 (181-214)||(24545824-24545857)
chr3 (181-221)||(17044242-17044282)
chr3 (181-213)||(22842454-22842486)
chr3 (181-213)||(45804244-45804276)
chr3 (181-213)||(50351914-50351946)
chr3 (181-221)||(53646743-53646783)
chr3 (181-216)||(12540517-12540552)
chr3 (7-63)||(12540318-12540375)
chr3 (181-214)||(14519528-14519561)
chr3 (180-221)||(17207375-17207416)
chr3 (181-221)||(1208782-1208822)
[»] scaffold0628 (2 HSPs)
scaffold0628 (181-214)||(4368-4401)
scaffold0628 (181-214)||(8928-8961)
[»] scaffold0203 (1 HSPs)
scaffold0203 (181-214)||(19022-19055)
[»] scaffold0108 (1 HSPs)
scaffold0108 (181-214)||(7728-7761)
[»] scaffold0032 (1 HSPs)
scaffold0032 (181-214)||(62942-62975)
[»] scaffold0462 (2 HSPs)
scaffold0462 (181-221)||(559-599)
scaffold0462 (181-221)||(6065-6105)
[»] scaffold0174 (2 HSPs)
scaffold0174 (7-62)||(15054-15110)
scaffold0174 (7-62)||(15010-15066)
[»] scaffold0125 (2 HSPs)
scaffold0125 (181-221)||(27523-27563)
scaffold0125 (18-62)||(27307-27352)
[»] scaffold0056 (4 HSPs)
scaffold0056 (181-221)||(15819-15859)
scaffold0056 (17-62)||(15379-15424)
scaffold0056 (6-62)||(15587-15644)
scaffold0056 (18-62)||(15643-15688)
[»] chr4 (8 HSPs)
chr4 (181-221)||(12622611-12622651)
chr4 (181-213)||(25512708-25512740)
chr4 (181-213)||(55582410-55582442)
chr4 (181-214)||(19566773-19566806)
chr4 (181-210)||(37838752-37838781)
chr4 (181-210)||(42597481-42597510)
chr4 (22-62)||(44024489-44024529)
chr4 (7-62)||(45315285-45315341)
[»] scaffold0230 (4 HSPs)
scaffold0230 (183-214)||(7610-7641)
scaffold0230 (7-60)||(7807-7861)
scaffold0230 (7-63)||(7892-7949)
scaffold0230 (17-62)||(7937-7982)
[»] scaffold0059 (1 HSPs)
scaffold0059 (181-216)||(49209-49244)
[»] scaffold0231 (1 HSPs)
scaffold0231 (181-211)||(18590-18620)
[»] scaffold0401 (1 HSPs)
scaffold0401 (22-62)||(7906-7946)


Alignment Details
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 6833442 - 6833482
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatcatgaac 221  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  6833442 acgactttgcatcataatatcataattcatcaatcatgaac 6833482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 25263023 - 25262987
Alignment:
Q  180 gacgactttgcatcataatatcataattcatcaatca 216  Q
    |||||||||||||||||||||||||||||||||||||    
T  25263023 gacgactttgcatcataatatcataattcatcaatca 25262987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 216
Target Start/End: Original strand, 45496202 - 45496237
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatca 216  Q
    ||||||||||||||||||||||||||||||||||||    
T  45496202 acgactttgcatcataatatcataattcatcaatca 45496237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 6833209 - 6833254
Alignment:
Q  17 tcagagcatcaaaccctctgctttaaatgaatgattatacattcca 62  Q
    |||||||||||| |||||  ||||||||||||||||||||||||||    
T  6833209 tcagagcatcaagccctcaactttaaatgaatgattatacattcca 6833254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 17903876 - 17903843
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaat 214  Q
    ||||||||||||||||||||||||||||||||||    
T  17903876 acgactttgcatcataatatcataattcatcaat 17903843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 7321738 - 7321698
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatcatgaac 221  Q
    ||||||| |||||||||||||||||||||||||| ||||||    
T  7321738 acgacttcgcatcataatatcataattcatcaattatgaac 7321698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 50543827 - 50543867
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatcatgaac 221  Q
    ||||||| |||||||||||||||||||||||||| ||||||    
T  50543827 acgacttcgcatcataatatcataattcatcaattatgaac 50543867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 216
Target Start/End: Original strand, 12710093 - 12710128
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatca 216  Q
    ||||||||||||||||||||| ||||||||||||||    
T  12710093 acgactttgcatcataatatcgtaattcatcaatca 12710128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 211
Target Start/End: Original strand, 39060318 - 39060349
Alignment:
Q  180 gacgactttgcatcataatatcataattcatc 211  Q
    ||||||||||||||||||||||||||||||||    
T  39060318 gacgactttgcatcataatatcataattcatc 39060349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 214
Target Start/End: Complemental strand, 14793312 - 14793278
Alignment:
Q  180 gacgactttgcatcataatatcataattcatcaat 214  Q
    |||||||| ||||||||||||||||||||||||||    
T  14793312 gacgacttcgcatcataatatcataattcatcaat 14793278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 24720644 - 24720611
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaat 214  Q
    ||||||| ||||||||||||||||||||||||||    
T  24720644 acgacttcgcatcataatatcataattcatcaat 24720611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 28477595 - 28477562
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaat 214  Q
    ||||||||||||||| ||||||||||||||||||    
T  28477595 acgactttgcatcatgatatcataattcatcaat 28477562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 65051 - 64996
Alignment:
Q  7 attataaatttcagagcatcaaaccctctgctttaaatgaatgattatacattcca 62  Q
    |||||| ||| |||||||||||||||||  ||||||||||||||||||||||||||    
T  65051 attatacattccagagcatcaaaccctcaactttaaatgaatgattatacattcca 64996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 64855 - 64815
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatcatgaac 221  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  64855 acgactttgcatcataatatcataattcatcaataatgaac 64815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 6574083 - 6574028
Alignment:
Q  7 attataaatttcagagcatcaaaccctctgctttaaatgaatgattatacattcca 62  Q
    ||||||||||||||||||||||  ||||  ||||||||||||||||||||||||||    
T  6574083 attataaatttcagagcatcaagtcctcaactttaaatgaatgattatacattcca 6574028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 6573906 - 6573865
Alignment:
Q  180 gacgactttgcatcataatatcataattcatcaatcatgaac 221  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  6573906 gacgactttgcatcataatatcataattcatcaattatgaac 6573865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 22207407 - 22207447
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatcatgaac 221  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  22207407 acgactttgcatcataatatcataattcatcaattatgaac 22207447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 216
Target Start/End: Original strand, 22473761 - 22473796
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatca 216  Q
    ||||||||||||||||||||||||||||||||||||    
T  22473761 acgactttgcatcataatatcataattcatcaatca 22473796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 18815761 - 18815728
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaat 214  Q
    ||||||||||||||||||||||||||||||||||    
T  18815761 acgactttgcatcataatatcataattcatcaat 18815728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 18819681 - 18819641
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatcatgaac 221  Q
    |||||||||||||||||||||||||||||||| | ||||||    
T  18819681 acgactttgcatcataatatcataattcatcagttatgaac 18819641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 5079974 - 5080027
Alignment:
Q  7 attataaatttcagagcatcaaaccctctgctttaaatgaatgattatacattcc 61  Q
    |||||| ||||||||||||||| |||||| |||| ||||||||||| ||||||||    
T  5079974 attatacatttcagagcatcaagccctctacttt-aatgaatgattttacattcc 5080027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 214
Target Start/End: Original strand, 38988525 - 38988559
Alignment:
Q  180 gacgactttgcatcataatatcataattcatcaat 214  Q
    |||||||| ||||||||||||||||||||||||||    
T  38988525 gacgacttcgcatcataatatcataattcatcaat 38988559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 214
Target Start/End: Original strand, 39019622 - 39019656
Alignment:
Q  180 gacgactttgcatcataatatcataattcatcaat 214  Q
    |||||||| ||||||||||||||||||||||||||    
T  39019622 gacgacttcgcatcataatatcataattcatcaat 39019656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 17979304 - 17979271
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaat 214  Q
    ||||||| ||||||||||||||||||||||||||    
T  17979304 acgacttcgcatcataatatcataattcatcaat 17979271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 214
Target Start/End: Original strand, 21513505 - 21513538
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaat 214  Q
    ||||||| ||||||||||||||||||||||||||    
T  21513505 acgacttcgcatcataatatcataattcatcaat 21513538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 36405873 - 36405832
Alignment:
Q  180 gacgactttgcatcataatatcataattcatcaatcatgaac 221  Q
    |||||||| |||||||||||||||||||||| ||| ||||||    
T  36405873 gacgacttcgcatcataatatcataattcattaattatgaac 36405832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 92
Target Start/End: Complemental strand, 6574013 - 6573985
Alignment:
Q  64 caacttaatatgagtatgcatggactcag 92  Q
    |||||||||||||||||||||||||||||    
T  6574013 caacttaatatgagtatgcatggactcag 6573985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 36733454 - 36733414
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatcatgaac 221  Q
    |||| |||||||||||||||||||||||||| || ||||||    
T  36733454 acgaatttgcatcataatatcataattcatctattatgaac 36733414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 29044429 - 29044466
Alignment:
Q  184 actttgcatcataatatcataattcatcaatcatgaac 221  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29044429 actttgcatcataatatcataattcatcaatcatgaac 29044466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 19957786 - 19957753
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaat 214  Q
    ||||||||||||||||||||||||||||||||||    
T  19957786 acgactttgcatcataatatcataattcatcaat 19957753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 216
Target Start/End: Original strand, 19234550 - 19234585
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatca 216  Q
    ||||||||||||||||||||| ||||||||||||||    
T  19234550 acgactttgcatcataatatcgtaattcatcaatca 19234585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 21686591 - 21686558
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaat 214  Q
    ||||||| ||||||||||||||||||||||||||    
T  21686591 acgacttcgcatcataatatcataattcatcaat 21686558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 30674264 - 30674231
Alignment:
Q  183 gactttgcatcataatatcataattcatcaatca 216  Q
    ||||||||||||| ||||||||||||||||||||    
T  30674264 gactttgcatcatgatatcataattcatcaatca 30674231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 16062617 - 16062658
Alignment:
Q  180 gacgactttgcatcataatatcataattcatcaatcatgaac 221  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  16062617 gacgactttgcatcataatattataattcatcaatcatgaac 16062658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 216
Target Start/End: Original strand, 22110953 - 22110988
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatca 216  Q
    ||||||||||||||||||||||||||||||||||||    
T  22110953 acgactttgcatcataatatcataattcatcaatca 22110988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 214
Target Start/End: Complemental strand, 16605303 - 16605269
Alignment:
Q  180 gacgactttgcatcataatatcataattcatcaat 214  Q
    |||||||||||||||||||||||||||||||||||    
T  16605303 gacgactttgcatcataatatcataattcatcaat 16605269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 8834047 - 8834007
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatcatgaac 221  Q
    ||||||||||| |||||||||||||||||||||| ||||||    
T  8834047 acgactttgcagcataatatcataattcatcaattatgaac 8834007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 16062434 - 16062490
Alignment:
Q  7 attataaatttcagagcatcaaaccctctgctttaa-atgaatgattatacattcca 62  Q
    |||||| ||| ||||||||||| |||||| |||||| ||||||||||||||||||||    
T  16062434 attatacattccagagcatcaagccctctactttaatatgaatgattatacattcca 16062490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 20198596 - 20198556
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatcatgaac 221  Q
    ||||||| |||||||||||||||||||||||||| ||||||    
T  20198596 acgacttcgcatcataatatcataattcatcaattatgaac 20198556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 21401996 - 21401940
Alignment:
Q  7 attataaatttcagagcatcaaaccctctgctttaa-atgaatgattatacattcca 62  Q
    |||||| ||| ||||||||||| |||||| |||||| ||||||||||||||||||||    
T  21401996 attatacattccagagcatcaagccctctactttaatatgaatgattatacattcca 21401940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 216
Target Start/End: Complemental strand, 21401831 - 21401796
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatca 216  Q
    ||||||||||||||||||||| ||||||||||||||    
T  21401831 acgactttgcatcataatatcgtaattcatcaatca 21401796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 214
Target Start/End: Original strand, 660158 - 660191
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaat 214  Q
    ||||||||||||||||||| ||||||||||||||    
T  660158 acgactttgcatcataataccataattcatcaat 660191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Original strand, 19076444 - 19076473
Alignment:
Q  181 acgactttgcatcataatatcataattcat 210  Q
    ||||||||||||||||||||||||||||||    
T  19076444 acgactttgcatcataatatcataattcat 19076473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 1628321 - 1628281
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatcatgaac 221  Q
    ||||||| |||| ||||||||||||||||||||| ||||||    
T  1628321 acgacttcgcattataatatcataattcatcaattatgaac 1628281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 92
Target Start/End: Complemental strand, 8834164 - 8834136
Alignment:
Q  64 caacttaatatgagtatgcatggactcag 92  Q
    |||||||||||||||||||||||||||||    
T  8834164 caacttaatatgagtatgcatggactcag 8834136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 14026758 - 14026718
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatcatgaac 221  Q
    ||||||| || ||||||||||||||||||||||| ||||||    
T  14026758 acgacttcgcttcataatatcataattcatcaattatgaac 14026718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 48213786 - 48213750
Alignment:
Q  180 gacgactttgcatcataatatcataattcatcaatca 216  Q
    |||||||||||||||||||||||||||||||||||||    
T  48213786 gacgactttgcatcataatatcataattcatcaatca 48213750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 15576872 - 15576839
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaat 214  Q
    ||||||||||||||||||||||||||||||||||    
T  15576872 acgactttgcatcataatatcataattcatcaat 15576839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 15120134 - 15120094
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatcatgaac 221  Q
    |||| ||||||||||||||||||||||||||||| ||||||    
T  15120134 acgaatttgcatcataatatcataattcatcaattatgaac 15120094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 216
Target Start/End: Complemental strand, 24270680 - 24270645
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatca 216  Q
    ||||||| ||||||||||||||||||||||||||||    
T  24270680 acgacttcgcatcataatatcataattcatcaatca 24270645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 16251359 - 16251326
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaat 214  Q
    |||||||||||||||||||| |||||||||||||    
T  16251359 acgactttgcatcataatataataattcatcaat 16251326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 213
Target Start/End: Complemental strand, 4691685 - 4691653
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaa 213  Q
    ||||||| |||||||||||||||||||||||||    
T  4691685 acgacttcgcatcataatatcataattcatcaa 4691653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 11314209 - 11314153
Alignment:
Q  7 attataaatttcagagcatcaaaccctctgctttaa-atgaatgattatacattcca 62  Q
    |||||| ||| |||| |||||| |||||| |||||| ||||||||||||||||||||    
T  11314209 attatacattccagaacatcaagccctctactttaatatgaatgattatacattcca 11314153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 13746067 - 13746011
Alignment:
Q  7 attataaatttcagagcatcaaaccctctgctttaa-atgaatgattatacattcca 62  Q
    |||||| ||| ||||||||||| |||||  |||||| ||||||||||||||||||||    
T  13746067 attatatattccagagcatcaagccctcaactttaatatgaatgattatacattcca 13746011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 13746155 - 13746099
Alignment:
Q  7 attataaatttcagagcatcaaaccctctgctttaa-atgaatgattatacattcca 62  Q
    |||||| ||| ||||||||||| |||||  |||||| ||||||||||||||||||||    
T  13746155 attatatattccagagcatcaatccctcaactttaatatgaatgattatacattcca 13746099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 20253417 - 20253389
Alignment:
Q  186 tttgcatcataatatcataattcatcaat 214  Q
    |||||||||||||||||||||||||||||    
T  20253417 tttgcatcataatatcataattcatcaat 20253389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 216
Target Start/End: Original strand, 1878 - 1913
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatca 216  Q
    ||||||||||||||||||||||||||||||||||||    
T  1878 acgactttgcatcataatatcataattcatcaatca 1913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 216
Target Start/End: Original strand, 3898 - 3933
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatca 216  Q
    ||||||||||||||||||||||||||||||||||||    
T  3898 acgactttgcatcataatatcataattcatcaatca 3933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 67232 - 67177
Alignment:
Q  7 attataaatttcagagcatcaaaccctctgctttaaatgaatgattatacattcca 62  Q
    |||||| ||| ||||||||||| |||||| ||||| ||||||||||||||||||||    
T  67232 attatacattccagagcatcaatccctctactttatatgaatgattatacattcca 67177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 67275 - 67220
Alignment:
Q  7 attataaatttcagagcatcaaaccctctgctttaaatgaatgattatacattcca 62  Q
    |||||| ||||||||||||||| || ||  ||||||||||||||||||||||||||    
T  67275 attatacatttcagagcatcaagccatcaactttaaatgaatgattatacattcca 67220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 66958 - 66918
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatcatgaac 221  Q
    ||||||| |||||||||||||||||||||||||| ||||||    
T  66958 acgacttcgcatcataatatcataattcatcaattatgaac 66918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 67189 - 67131
Alignment:
Q  7 attataaatttcagagcatcaaaccctctgctttaa--atgaatgattatacattccaa 63  Q
    |||||| ||| ||||||||||| |||||| ||||||  |||||||||||||||||||||    
T  67189 attatacattccagagcatcaagccctctactttaaatatgaatgattatacattccaa 67131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 74725 - 74760
Alignment:
Q  180 gacgactttgcatcataatatcataattcatcaatca 216  Q
    |||||||||||||||||||||||| ||||||||||||    
T  74725 gacgactttgcatcataatatcat-attcatcaatca 74760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 45679461 - 45679516
Alignment:
Q  7 attataaatttcagagcatcaaaccctctgctttaaatgaatgattatacattcca 62  Q
    |||||| ||| ||||||||||| |||||  ||||||||||||||||||||||||||    
T  45679461 attatacattccagagcatcaagccctcaactttaaatgaatgattatacattcca 45679516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 21336565 - 21336527
Alignment:
Q  183 gactttgcatcataatatcataattcatcaatcatgaac 221  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  21336565 gactttgcatcataatatcataattcatcaattatgaac 21336527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 1384589 - 1384556
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaat 214  Q
    ||||||||||||||||||||||||||||||||||    
T  1384589 acgactttgcatcataatatcataattcatcaat 1384556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 21316674 - 21316634
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatcatgaac 221  Q
    ||||||||||||||||||||||||||| |||||| ||||||    
T  21316674 acgactttgcatcataatatcataattaatcaattatgaac 21316634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 25085472 - 25085516
Alignment:
Q  18 cagagcatcaaaccctctgctttaaatgaatgattatacattcca 62  Q
    ||||||||||| |||||  ||||||||||||||||||||||||||    
T  25085472 cagagcatcaagccctcaactttaaatgaatgattatacattcca 25085516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 25085645 - 25085685
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatcatgaac 221  Q
    |||| ||||||||||||||||||||||||||||| ||||||    
T  25085645 acgaatttgcatcataatatcataattcatcaattatgaac 25085685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 45679504 - 45679560
Alignment:
Q  7 attataaatttcagagcatcaaaccctctgctttaa-atgaatgattatacattcca 62  Q
    |||||| ||| ||||||||||| |||||| |||||| ||||||||||||||||||||    
T  45679504 attatacattccagagcatcaagccctctactttaatatgaatgattatacattcca 45679560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 213
Target Start/End: Complemental strand, 25587591 - 25587561
Alignment:
Q  183 gactttgcatcataatatcataattcatcaa 213  Q
    |||||||||||||||||||||||||||||||    
T  25587591 gactttgcatcataatatcataattcatcaa 25587561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 22685722 - 22685779
Alignment:
Q  7 attataaatttcagagcatcaaaccctctgctttaa-atgaatgattatacattccaa 63  Q
    |||||| ||| ||||||||||| |||||  |||||| |||||||||||||||||||||    
T  22685722 attatatattccagagcatcaagccctcaactttaatatgaatgattatacattccaa 22685779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Original strand, 37379525 - 37379554
Alignment:
Q  181 acgactttgcatcataatatcataattcat 210  Q
    ||||||||||||||||||||||||||||||    
T  37379525 acgactttgcatcataatatcataattcat 37379554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 92
Target Start/End: Original strand, 25085531 - 25085559
Alignment:
Q  64 caacttaatatgagtatgcatggactcag 92  Q
    |||||||||||||||||||||||||||||    
T  25085531 caacttaatatgagtatgcatggactcag 25085559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 45679394 - 45679450
Alignment:
Q  7 attataaatttcagagcatcaaaccctctgctttaa-atgaatgattatacattcca 62  Q
    |||||| ||| ||||||||||| |||||  |||||| ||||||||||||||||||||    
T  45679394 attatacattccagagcatcaagccctcaactttaatatgaatgattatacattcca 45679450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 214
Target Start/End: Original strand, 7915 - 7949
Alignment:
Q  180 gacgactttgcatcataatatcataattcatcaat 214  Q
    |||||||||||||||||||||||||||||||||||    
T  7915 gacgactttgcatcataatatcataattcatcaat 7949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 11170 - 11132
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatcatga 219  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  11170 acgactttgcatcataatataataattcatcaatcatga 11132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 92
Target Start/End: Complemental strand, 11278 - 11250
Alignment:
Q  64 caacttaatatgagtatgcatggactcag 92  Q
    |||||||||||||||||||||||||||||    
T  11278 caacttaatatgagtatgcatggactcag 11250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 214
Target Start/End: Original strand, 15565749 - 15565783
Alignment:
Q  180 gacgactttgcatcataatatcataattcatcaat 214  Q
    |||||||||||||||||||||||||||||||||||    
T  15565749 gacgactttgcatcataatatcataattcatcaat 15565783  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 53646961 - 53646911
Alignment:
Q  7 attataaatttcagagcatcaaaccctctgctttaaatgaatgattataca 57  Q
    |||||| ||| ||||||||||| ||||| ||||||||||||||||||||||    
T  53646961 attatacattccagagcatcaagccctcagctttaaatgaatgattataca 53646911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 214
Target Start/End: Original strand, 24545824 - 24545857
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaat 214  Q
    ||||||||||||||||||||||||||||||||||    
T  24545824 acgactttgcatcataatatcataattcatcaat 24545857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 17044242 - 17044282
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatcatgaac 221  Q
    |||| ||||||||||||||||||||||||||||| ||||||    
T  17044242 acgattttgcatcataatatcataattcatcaattatgaac 17044282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 213
Target Start/End: Complemental strand, 22842486 - 22842454
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaa 213  Q
    |||||||||||||||||||||||||||||||||    
T  22842486 acgactttgcatcataatatcataattcatcaa 22842454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 213
Target Start/End: Complemental strand, 45804276 - 45804244
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaa 213  Q
    |||||||||||||||||||||||||||||||||    
T  45804276 acgactttgcatcataatatcataattcatcaa 45804244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 213
Target Start/End: Complemental strand, 50351946 - 50351914
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaa 213  Q
    |||||||||||||||||||||||||||||||||    
T  50351946 acgactttgcatcataatatcataattcatcaa 50351914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 53646783 - 53646743
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatcatgaac 221  Q
    |||||||||||||||||||| ||||||||||||| ||||||    
T  53646783 acgactttgcatcataatattataattcatcaattatgaac 53646743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 216
Target Start/End: Original strand, 12540517 - 12540552
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatca 216  Q
    ||||||||||||||||||||||||||| ||||||||    
T  12540517 acgactttgcatcataatatcataattaatcaatca 12540552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 12540318 - 12540375
Alignment:
Q  7 attataaatttcagagcatcaaaccctctgctttaa-atgaatgattatacattccaa 63  Q
    |||||| ||| ||||||||||| |||||  |||||| |||||||||||||||||||||    
T  12540318 attatacattccagagcatcaagccctcaactttaacatgaatgattatacattccaa 12540375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 214
Target Start/End: Original strand, 14519528 - 14519561
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaat 214  Q
    ||||||||||||||||||||||||||| ||||||    
T  14519528 acgactttgcatcataatatcataatttatcaat 14519561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 17207375 - 17207416
Alignment:
Q  180 gacgactttgcatcataatatcataattcatcaatcatgaac 221  Q
    |||||||| ||||||||| |||||||||||||||| ||||||    
T  17207375 gacgacttcgcatcataagatcataattcatcaattatgaac 17207416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 1208822 - 1208782
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatcatgaac 221  Q
    |||||||  ||||||||||||||||||||||||| ||||||    
T  1208822 acgacttcacatcataatatcataattcatcaattatgaac 1208782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 4401 - 4368
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaat 214  Q
    ||||||||||||||||||||||||||||||||||    
T  4401 acgactttgcatcataatatcataattcatcaat 4368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 8961 - 8928
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaat 214  Q
    ||||||||||||||||||||||||||||||||||    
T  8961 acgactttgcatcataatatcataattcatcaat 8928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 19055 - 19022
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaat 214  Q
    ||||||||||||||||||||||||||||||||||    
T  19055 acgactttgcatcataatatcataattcatcaat 19022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 7761 - 7728
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaat 214  Q
    ||||||||||||||||||||||||||||||||||    
T  7761 acgactttgcatcataatatcataattcatcaat 7728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 62975 - 62942
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaat 214  Q
    ||||||||||||||||||||||||||||||||||    
T  62975 acgactttgcatcataatatcataattcatcaat 62942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0462 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0462
Description:

Target: scaffold0462; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 559 - 599
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatcatgaac 221  Q
    |||||||||||||||||||| ||||||||||||| ||||||    
T  559 acgactttgcatcataatattataattcatcaattatgaac 599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0462; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 6065 - 6105
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatcatgaac 221  Q
    |||||||||||||||||||| ||||||||||||| ||||||    
T  6065 acgactttgcatcataatattataattcatcaattatgaac 6105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 15054 - 15110
Alignment:
Q  7 attataaatttcagagcatcaaaccctctgctttaa-atgaatgattatacattcca 62  Q
    |||||| ||| |||||||||||||||||  |||||| ||||||||||||||||||||    
T  15054 attatacattccagagcatcaaaccctcaactttaatatgaatgattatacattcca 15110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 15010 - 15066
Alignment:
Q  7 attataaatttcagagcatcaaaccctctgctttaa-atgaatgattatacattcca 62  Q
    |||||| ||| ||||||||||| |||||  |||||| ||||||||||||||||||||    
T  15010 attatacattccagagcatcaagccctcaactttaatatgaatgattatacattcca 15066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 27523 - 27563
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatcatgaac 221  Q
    ||||||||| |||||||||||||||||||||||| ||||||    
T  27523 acgactttgaatcataatatcataattcatcaattatgaac 27563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 27307 - 27352
Alignment:
Q  18 cagagcatcaaaccctctgctttaa-atgaatgattatacattcca 62  Q
    ||||||||||| |||||| |||||| ||||||||||||||||||||    
T  27307 cagagcatcaagccctctactttaatatgaatgattatacattcca 27352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 15819 - 15859
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatcatgaac 221  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  15819 acgaatttgcatcataatatgataattcatcaatcatgaac 15859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 15379 - 15424
Alignment:
Q  17 tcagagcatcaaaccctctgctttaaatgaatgattatacattcca 62  Q
    |||||||||||| |||||  ||||| ||||||||||||||||||||    
T  15379 tcagagcatcaagccctcaactttatatgaatgattatacattcca 15424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 15587 - 15644
Alignment:
Q  6 aattataaatttcagagcatcaaaccctctgctttaa-atgaatgattatacattcca 62  Q
    ||||||| ||| ||||||||||| |||||| |||||| ||||||||||||||| ||||    
T  15587 aattatacattccagagcatcaagccctctactttaatatgaatgattatacaatcca 15644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 15643 - 15688
Alignment:
Q  18 cagagcatcaaaccctctgctttaa-atgaatgattatacattcca 62  Q
    ||||||||||| |||||| |||||| ||||||||||||||||||||    
T  15643 cagagcatcaagccctctactttaatatgaatgattatacattcca 15688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 12622611 - 12622651
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatcatgaac 221  Q
    ||||||| |||||||||||||||||||||||||| ||||||    
T  12622611 acgacttcgcatcataatatcataattcatcaattatgaac 12622651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 25512708 - 25512740
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaa 213  Q
    |||||||||||||||||||||||||||||||||    
T  25512708 acgactttgcatcataatatcataattcatcaa 25512740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 55582410 - 55582442
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaa 213  Q
    |||||||||||||||||||||||||||||||||    
T  55582410 acgactttgcatcataatatcataattcatcaa 55582442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 19566806 - 19566773
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaat 214  Q
    ||||||| ||||||||||||||||||||||||||    
T  19566806 acgacttcgcatcataatatcataattcatcaat 19566773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Complemental strand, 37838781 - 37838752
Alignment:
Q  181 acgactttgcatcataatatcataattcat 210  Q
    ||||||||||||||||||||||||||||||    
T  37838781 acgactttgcatcataatatcataattcat 37838752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 210
Target Start/End: Complemental strand, 42597510 - 42597481
Alignment:
Q  181 acgactttgcatcataatatcataattcat 210  Q
    ||||||||||||||||||||||||||||||    
T  42597510 acgactttgcatcataatatcataattcat 42597481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 44024529 - 44024489
Alignment:
Q  22 gcatcaaaccctctgctttaaatgaatgattatacattcca 62  Q
    ||||||||||| |  ||||||||||||||||||||||||||    
T  44024529 gcatcaaacccccaactttaaatgaatgattatacattcca 44024489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 45315341 - 45315285
Alignment:
Q  7 attataaatttcagagcatcaaaccctctgctttaa-atgaatgattatacattcca 62  Q
    |||||| ||| ||||||||||| |||||  |||||| ||||||||||||||||||||    
T  45315341 attatacattccagagcatcaagccctcaactttaatatgaatgattatacattcca 45315285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 214
Target Start/End: Complemental strand, 7641 - 7610
Alignment:
Q  183 gactttgcatcataatatcataattcatcaat 214  Q
    ||||||||||||||||||||||||||||||||    
T  7641 gactttgcatcataatatcataattcatcaat 7610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 7861 - 7807
Alignment:
Q  7 attataaatttcagagcatcaaaccctctgctttaa-atgaatgattatacattc 60  Q
    |||||| ||| ||||||||||| |||||| |||||| ||||||||||||||||||    
T  7861 attatatattccagagcatcaagccctctactttaatatgaatgattatacattc 7807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 7949 - 7892
Alignment:
Q  7 attataaatttcagagcatcaaaccctctgctttaa-atgaatgattatacattccaa 63  Q
    |||||| ||| ||||||||||| |||||| |||||| |||||||||||| ||||||||    
T  7949 attatacattccagagcatcaagccctctactttaatatgaatgattattcattccaa 7892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 7982 - 7937
Alignment:
Q  17 tcagagcatcaaaccctctgctttaaatgaatgattatacattcca 62  Q
    |||||||||||| |||||  ||| ||||||||||||||||||||||    
T  7982 tcagagcatcaatccctcaacttgaaatgaatgattatacattcca 7937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 216
Target Start/End: Original strand, 49209 - 49244
Alignment:
Q  181 acgactttgcatcataatatcataattcatcaatca 216  Q
    ||||||| ||||||||||||||||||||||||||||    
T  49209 acgacttcgcatcataatatcataattcatcaatca 49244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 211
Target Start/End: Complemental strand, 18620 - 18590
Alignment:
Q  181 acgactttgcatcataatatcataattcatc 211  Q
    |||||||||||||||||||||||||||||||    
T  18620 acgactttgcatcataatatcataattcatc 18590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0401 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 7906 - 7946
Alignment:
Q  22 gcatcaaaccctctgctttaaatgaatgattatacattcca 62  Q
    ||||||||||| |  ||||||||||||||||||||||||||    
T  7906 gcatcaaacccccaactttaaatgaatgattatacattcca 7946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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