View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_44 (Length: 406)
Name: NF10261A_low_44
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 49 - 401
Target Start/End: Complemental strand, 39956731 - 39956376
Alignment:
| Q |
49 |
gaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgatactcactactattgccctaaccgtaacctgtttctg |
148 |
Q |
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| T |
39956731 |
gaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgatagcatgatactcacgactattgccctagccgtaacctgtttctg |
39956632 |
T |
|
| Q |
149 |
ccacgaagcaacagattttcattcaaaccccttttcaacggaaatctcatcaagttgttcatcggaggtttcgacgtcacgtcgatgaggttctgaagcc |
248 |
Q |
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| T |
39956631 |
ccacgaaggaacagattttccttcaaaccctttttcaatggaaatctcatcaagttgttcatcggaggtttcgacgtcacgtcgatgaggttctgaagcc |
39956532 |
T |
|
| Q |
249 |
atgttacgatgaag---atgagtgaagagtgtggttgtgttgagtgtttggtttttgttttgcgattgttaatgaagtcgctttcgtgactactaggttg |
345 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39956531 |
atgttacgatgaagatgatgagtgaaaagtgtggttgtgttgagtgtttggtttttgttttgcgattgttaatgaagtcgctttcgtgactactaggttg |
39956432 |
T |
|
| Q |
346 |
acatgctgtgtctatttatagtaaaggggtttggagagtttagagtggtttggttt |
401 |
Q |
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| T |
39956431 |
acatgctgtgtctatttatagtaaaggggtttcgagagtttagagtggtttggttt |
39956376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 14 - 332
Target Start/End: Complemental strand, 39941085 - 39940766
Alignment:
| Q |
14 |
gaaccctaacaacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgata |
113 |
Q |
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| T |
39941085 |
gaaccctaacaacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgatagcatgata |
39940986 |
T |
|
| Q |
114 |
ctcactactattgccctaaccgtaacctgtttctgccacgaagcaacagattttcattcaaaccccttttcaacggaaatctcatcaagttgttcatcgg |
213 |
Q |
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||||| |||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
39940985 |
ctcacgactattgccctaacagtaacctgtttctgccacgaaggaacagattttccttcaaaccctttttcaatggaaatctcatcaagttgttcatcgg |
39940886 |
T |
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| Q |
214 |
aggtttcgacgtcacgtcgatgaggttctgaagccatgttacgatgaagatgagtgaagagtgtggttgtgt-tgagtgtttggtttttgttttgcgatt |
312 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||| |
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| T |
39940885 |
aggtttcgacgtcacgtcgatgaggttctggagccatgttacgatgaagatgagtgaagagtgtggttgtatcagagtgtttggttttgattttgcgatt |
39940786 |
T |
|
| Q |
313 |
gttaatgaagtcgctttcgt |
332 |
Q |
| |
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|||||||||||||||||||| |
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| T |
39940785 |
gttaatgaagtcgctttcgt |
39940766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 28750694 - 28750890
Alignment:
| Q |
15 |
aaccctaacaacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgatac |
114 |
Q |
| |
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||||||||||| ||||| ||||||||||| || |||||||||||||| |||||||||| ||||||||| || || ||||||||||| || ||||||| || |
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| T |
28750694 |
aaccctaacaatccagcagaaacattcaacgaaggaataatcccagttgtgagattcaacttcatcacgataaacgtgaacatcaccgacaacatgagac |
28750793 |
T |
|
| Q |
115 |
tcactactattgccctaaccgtaacctgtttctgccacgaagcaacagattttcattcaaaccccttttcaacggaaatctcatcaagttgttcatc |
211 |
Q |
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| T |
28750794 |
tcgcaaatattgccctaacagtgacctgtttctgccacgtaggaacagatgttccttcaaaccctttttccacagaaatctcctcgagttgttcatc |
28750890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 28741849 - 28742020
Alignment:
| Q |
15 |
aaccctaacaacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgatac |
114 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| |||||||| || || ||||||| || |
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| T |
28741849 |
aaccctaacaacccagctgaaacattcaaagaaggaataatcccagttgtgagattcagtttcatcacaatgaacgtgaacattaccgacaacatgagac |
28741948 |
T |
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| Q |
115 |
tcactactattgccctaaccgtaacctgtttctgccacgaagcaacagattttcattcaaaccccttttcaa |
186 |
Q |
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| T |
28741949 |
tcacgaataatgccctaacagtaacctgcttctgccacgtaggaacaagttttccttcaaaccctttttcaa |
28742020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 7963656 - 7963790
Alignment:
| Q |
18 |
cctaacaacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactga-taacatgatactc |
116 |
Q |
| |
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|||||||||||||| |||||||||| || ||||||||||||| ||||||||||| ||||||| ||||| |||||||||| || ||||||| |||| |
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| T |
7963656 |
cctaacaacccagcaaaaacattcaacgaatgaataatcccagttgtgagattcagattcatcatgatgaatgtgaacatcatcgaccaacatgagactc |
7963755 |
T |
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| Q |
117 |
actactattgccctaaccgtaacctgtttctgcca |
151 |
Q |
| |
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|| | ||| | ||||||| |||| | ||||||||| |
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| T |
7963756 |
acgaatataggcctaaccataacatttttctgcca |
7963790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 7961143 - 7961212
Alignment:
| Q |
28 |
cagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacat |
97 |
Q |
| |
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|||| |||||||| || || |||||||| ||||| |||||||| ||||||||||| ||||| |||||||| |
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| T |
7961143 |
cagcagaaacatttaatgaaggaataattccagttgtgagattgagcttcatcacgatgaatgtgaacat |
7961212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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