View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_448 (Length: 219)
Name: NF10261A_low_448
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_448 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 4e-71; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 10 - 213
Target Start/End: Complemental strand, 7589799 - 7589593
Alignment:
| Q |
10 |
catcaatccattcctaacatttcatcttggttaattttgtatttgcaactactccttcgttcaacattcgatcaggctaattctaggagtaaaagaaatc |
109 |
Q |
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| T |
7589799 |
catcaatccattcctaacatttcatcttgtctaattttgtatttgcaactactccttcgttcaccattcgatcaggctaattatgggagtaaaagaaatc |
7589700 |
T |
|
| Q |
110 |
gtgtctgcaccgtagctgcaagtttgaggcgactt---agagtcgtgatttagacgnnnnnnncgcatgaggtaagggcacttccccattcaacaccaaa |
206 |
Q |
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| T |
7589699 |
gtgtctgcaccgtagctgcaagtttgaggcgacttagaagagtcgtgatttagaagaaaaaaacgcatgaggtaagggcacttccccattcaactcaaaa |
7589600 |
T |
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| Q |
207 |
ctcgaca |
213 |
Q |
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|| |||| |
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| T |
7589599 |
ctagaca |
7589593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 10 - 131
Target Start/End: Original strand, 39184075 - 39184196
Alignment:
| Q |
10 |
catcaatccattcctaacatttcatcttggttaattttgtatttgcaactactccttcgttcaacattcgatcaggctaattctaggagtaaaagaaatc |
109 |
Q |
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||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||| |
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| T |
39184075 |
catcaatccattcctaacatttcatcttgtctaattttgtaattgcaactactccttcgttcaccattcgatcgggctaattctgagagtaaaagaaatc |
39184174 |
T |
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| Q |
110 |
gtgtctgcaccgtagctgcaag |
131 |
Q |
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|||||||||||||||||||||| |
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| T |
39184175 |
gtgtctgcaccgtagctgcaag |
39184196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 59 - 160
Target Start/End: Complemental strand, 21491864 - 21491763
Alignment:
| Q |
59 |
tactccttcgttcaacattcgatcaggctaattctaggagtaaaagaaatcgtgtctgcaccgtagctgcaagtttgaggcgacttagagtcgtgattta |
158 |
Q |
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|||||||||||||| |||||| || |||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
21491864 |
tactccttcgttcaccattcgttcgggctaattctgggagtaaaagaaattgtgtctgcatcgtagctgcaagtttgaggcggcttagagtcgtgattta |
21491765 |
T |
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| Q |
159 |
ga |
160 |
Q |
| |
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|| |
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| T |
21491764 |
ga |
21491763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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