View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_454 (Length: 217)
Name: NF10261A_low_454
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_454 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 52 - 217
Target Start/End: Original strand, 49124225 - 49124390
Alignment:
| Q |
52 |
attcataataaactttgttaaggggacaaaacttttaagatgcagaatgaaaacgatctataacttctccaatcggaattgctcattaatttgttaacag |
151 |
Q |
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| T |
49124225 |
attcataataaactttgttaaggggacaaaacttttaagatgcagaatgaaaacgatctataacttctccaatcggaattgttcattaatttgttaacag |
49124324 |
T |
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| Q |
152 |
ttgtaattctgaattttgtatacttggttaattttgtgattgaaaaagacataactatattccaag |
217 |
Q |
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| T |
49124325 |
ttgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccttaactacattccaag |
49124390 |
T |
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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 49124121 - 49124171
Alignment:
| Q |
9 |
agaagaatgtaaatatgttaagtgtgttaacatagattttaatattcataa |
59 |
Q |
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| T |
49124121 |
agaagaatgtaaatatgttaagtgtgttaacatagattttaatattcataa |
49124171 |
T |
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