View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_47 (Length: 398)
Name: NF10261A_low_47
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 42401963 - 42402193
Alignment:
| Q |
1 |
tcatcaactggattttagggatagcagaaacatatgaaaacatgcaggcactgatgcaggcatgactagatttatatcatatacagctaataaatgaacc |
100 |
Q |
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| T |
42401963 |
tcatcaactggattttagggatagcagaaacatatgaaaacatgcaggcactgatgcagacatgactagatttatatcatatacagctcataaatgaacc |
42402062 |
T |
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| Q |
101 |
gagtatattttaatcatgggttctcaaattaattgcataaatatccgaacagttattgtcatattgggtgcgagcttgatctagaaagacatctttcatt |
200 |
Q |
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| T |
42402063 |
gagtatattttaatcatgggttctcaaattaattgcataaatatccgaacagttattgtcatattgggtgcgagcttgatctagaaagacatctttcatt |
42402162 |
T |
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| Q |
201 |
caacagaaaaatagtataacaataaaataag |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
42402163 |
caacagaaaaatagtataacaataaaataag |
42402193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 303 - 392
Target Start/End: Original strand, 42402259 - 42402348
Alignment:
| Q |
303 |
taactaaacctaaacatcattacaattactctaaatgcctaacaaggaattggagatttactgaatgatgcttctttaaagaacaccaaa |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42402259 |
taactaaacctaaacatcattacaattactctaaatgcctaacaaggaattggagatttactgaatgatgcttctttaaagaacaccaaa |
42402348 |
T |
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