View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261A_low_472 (Length: 210)

Name: NF10261A_low_472
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261A_low_472
NF10261A_low_472
[»] chr3 (2 HSPs)
chr3 (24-147)||(10368672-10368795)
chr3 (137-179)||(10368827-10368869)
[»] chr8 (2 HSPs)
chr8 (64-137)||(11659585-11659658)
chr8 (64-137)||(11668754-11668827)
[»] chr4 (1 HSPs)
chr4 (27-102)||(53239215-53239290)
[»] chr1 (1 HSPs)
chr1 (27-102)||(2170330-2170405)


Alignment Details
Target: chr3 (Bit Score: 120; Significance: 1e-61; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 24 - 147
Target Start/End: Original strand, 10368672 - 10368795
Alignment:
Q  24 tcatctccttcatcacaacccgtgctgtagtggtatgaaaattgaaaaggacggcaagaagaagaaggaagttactatttctaggtatgggtttgcattt 123  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10368672 tcatctccttcatcacaacccgtactgtagtggtatgaaaattgaaaaggacggcaagaagaagaaggaagttactatttctaggtatgggtttgcattt 10368771  T
Q  124 cgatctcaccccttatatatatat 147  Q
    ||||||||||||||||||||||||    
T  10368772 cgatctcaccccttatatatatat 10368795  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 179
Target Start/End: Original strand, 10368827 - 10368869
Alignment:
Q  137 tatatatatatgcgtgtgtgtgtcttaaggaacaattgtggag 179  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  10368827 tatatatatatgcgtgtgtgtgtcttaaggaacaattgtggag 10368869  T

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Target: chr8 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 11659585 - 11659658
Alignment:
Q  64 attgaaaaggacggcaagaagaagaaggaagttactatttctaggtatgggtttgcatttcgatctcacccctt 137  Q
    |||||||||||| ||||||| |||||||| | ||||||||| ||||||||||||||||||||||||||| ||||    
T  11659585 attgaaaaggacagcaagaacaagaaggaggctactatttcaaggtatgggtttgcatttcgatctcactcctt 11659658  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 11668754 - 11668827
Alignment:
Q  64 attgaaaaggacggcaagaagaagaaggaagttactatttctaggtatgggtttgcatttcgatctcacccctt 137  Q
    |||||||||||| |||| ||||||||||| | ||||||||| |||||| |||||||||||||||||||| ||||    
T  11668754 attgaaaaggacagcaaaaagaagaaggaggctactatttcaaggtatcggtttgcatttcgatctcactcctt 11668827  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 53239215 - 53239290
Alignment:
Q  27 tctccttcatcacaacccgtgctgtagtggtatgaaaattgaaaaggacggcaagaagaagaaggaagttactatt 102  Q
    ||||||||||  ||||| | |||| |||||| ||||||||||||||||| ||||||||||||| |||| |||||||    
T  53239215 tctccttcattgcaaccagcgctgcagtggtctgaaaattgaaaaggacagcaagaagaagaaagaagctactatt 53239290  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 2170330 - 2170405
Alignment:
Q  27 tctccttcatcacaacccgtgctgtagtggtatgaaaattgaaaaggacggcaagaagaagaaggaagttactatt 102  Q
    ||||||||||  ||||| | |||| |||||| ||||||||||||||||| ||||||||||||| |||| |||||||    
T  2170330 tctccttcattgcaaccagcgctgcagtggtctgaaaattgaaaaggacagcaagaagaagaaagaagctactatt 2170405  T

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