View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10261A_low_48 (Length: 395)
Name: NF10261A_low_48
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_48 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 7 - 386
Target Start/End: Original strand, 7440462 - 7440845
Alignment:
| Q |
7 |
ctaagactgttagactttcttttgtaatggaatcgtaccccacaatcaaagatatttaggtgttagaaggttcatttgccctcaatcctccttctagcac |
106 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
7440462 |
ctaagactgttatactttcttttgtaatggaatcgtaccccacaatcaaagatatttaggtgctaaaaggttcatttgccctcaatcctccttctagcac |
7440561 |
T |
|
| Q |
107 |
caatgttttgatatcaagtttgatttaaaacatgtttaggtattgattgctttgactcctttataagtcatcacaattttcttctttgtta----aatgg |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7440562 |
caatgttttgatatcaagtttgatttaaaacatgtttaggtattgattgctttgactcctttataagtcatcacaattttcttctttgttaaattaatgg |
7440661 |
T |
|
| Q |
203 |
ctagagtgaattgaggaaatcaagcgttataaattatctttaattttgatttctaagttgttaaagtatacctaatatatgcaaaacattaaagaaggca |
302 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||| |
|
|
| T |
7440662 |
ctagagtgaattgaggaaatcaagtgttataaattatctttaattttgatttctaagttgttaaagtttacctaatatatgcaagacattaaataaggca |
7440761 |
T |
|
| Q |
303 |
agggccggttgtattatggctcatcagaggtaatattgttaactgaatcatagcagtaatactatatatattgtttgtaacacc |
386 |
Q |
| |
|
|||| |||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
7440762 |
aggggcggtagtagtatggctcatcagaggtaatattgttaactgaatcatagtagtaatattatatatattgtttgtaacacc |
7440845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 343 - 385
Target Start/End: Complemental strand, 6397845 - 6397803
Alignment:
| Q |
343 |
aactgaatcatagcagtaatactatatatattgtttgtaacac |
385 |
Q |
| |
|
||||||||||||| | ||||||||||||||||| ||||||||| |
|
|
| T |
6397845 |
aactgaatcatagtaataatactatatatattgcttgtaacac |
6397803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 36010202 - 36010253
Alignment:
| Q |
333 |
taatattgttaactgaatcatagcagtaatactatatatattgtttgtaaca |
384 |
Q |
| |
|
||||||||| ||||||||| ||| |||| || |||||||||||||||||||| |
|
|
| T |
36010202 |
taatattgtgaactgaatcgtagaagtagtattatatatattgtttgtaaca |
36010253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University