View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_481 (Length: 207)
Name: NF10261A_low_481
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_481 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 15718076 - 15718245
Alignment:
| Q |
18 |
acatcaaaggaaaaactaaagataatataaaggcaagaatggatttgaagttatattgcaagcgcaaggacttagaattacttgaacacagtaatgggag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15718076 |
acatcaaaggaaaaactaaagataatataaaggcaagaatggatttgaagttatattgcaagcgcaaggacttagaattacttgaacacagtaatgggag |
15718175 |
T |
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| Q |
118 |
gaccataaagcccaaggcaaactacacatttactctggagcaaaaaagagcaatttgtgaatgggtaaaa |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15718176 |
gaccataaagcccaaggcaaactacacatttactctggagcaaaaaagagcaatttgtgaatgggtaaaa |
15718245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 15256268 - 15256099
Alignment:
| Q |
18 |
acatcaaaggaaaaactaaagataatataaaggcaagaatggatttgaagttatattgcaagcgcaaggacttagaattacttgaacacagtaatgggag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15256268 |
acatcaaaggaaaaactaaagataatataaaggcaagaatggatttgaagttatattgcaagcgcaaggacttagaattacttgaacacagtaatgggag |
15256169 |
T |
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| Q |
118 |
gaccataaagcccaaggcaaactacacatttactctggagcaaaaaagagcaatttgtgaatgggtaaaa |
187 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15256168 |
gaccataaaacccaaggcaaactacacatttactctggagcaaaaaagagcaatttgtgaatgggtaaaa |
15256099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 39290058 - 39290227
Alignment:
| Q |
18 |
acatcaaaggaaaaactaaagataatataaaggcaagaatggatttgaagttatattgcaagcgcaaggacttagaattacttgaacacagtaatgggag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39290058 |
acatcaaaggaaaaactaaagataatataaaggcaagaatggatttgaagttgtattgcaagcgcaaggacttagaattacttgaacacagtaatgggag |
39290157 |
T |
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| Q |
118 |
gaccataaagcccaaggcaaactacacatttactctggagcaaaaaagagcaatttgtgaatgggtaaaa |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39290158 |
gaccataaagcccaaggcaaactacacatttactctggagcaaaaaagagcaatttgtgaatgggtaaaa |
39290227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 13941033 - 13941200
Alignment:
| Q |
20 |
atcaaaggaaaaactaaagataatataaaggcaagaatggatttgaagttatattgcaagcgcaaggacttagaattacttgaacacagtaatgggagga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13941033 |
atcaaaggaaaaactaaagataatataaaggcaagaatggatttgaagttgtattgcaagcgcaaggacttagaattacttgaacacagtaatgggagga |
13941132 |
T |
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| Q |
120 |
ccataaagcccaaggcaaactacacatttactctggagcaaaaaagagcaatttgtgaatgggtaaaa |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13941133 |
ccataaagcccaaggcaaactacacatttactctggagcaaaaaagagcaatttgtgaatgggtaaaa |
13941200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 17001106 - 17001275
Alignment:
| Q |
18 |
acatcaaaggaaaaactaaagataatataaaggcaagaatggatttgaagttatattgcaagcgcaaggacttagaattacttgaacacagtaatgggag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
17001106 |
acatcaaaggaaaaactaaagataatataaaggcaagaatggatttgaagttatattgcaagcgcaaggacttagaattacttgaacaaagtaatgggag |
17001205 |
T |
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| Q |
118 |
gaccataaagcccaaggcaaactacacatttactctggagcaaaaaagagcaatttgtgaatgggtaaaa |
187 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17001206 |
gaccataaagtccaaggcaaactacacatttactctggagcaaaaaagagcaatttgtgaatgggtaaaa |
17001275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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