View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_485 (Length: 206)
Name: NF10261A_low_485
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_485 |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 9e-66; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 27514411 - 27514584
Alignment:
| Q |
17 |
ggacatcagcattatcataatgaagaagacatgtctaaagcatgtttcaaacattatgaagtacaccaattaaatcatcaacaaatatgaggttgcacat |
116 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||||||||| || |||||||||||||||||||||||||| || |||||||||| || |||| |
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| T |
27514411 |
ggacatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaagtacaccaattaaatcatgaagaaatatgaggctg-acat |
27514509 |
T |
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| Q |
117 |
ctcatttggtagcaagtggaagctttgtattggaca-ttgtttaagaaggtagggtacactcttagacaacacca |
190 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27514510 |
ctcatttggtagcaagtggaagctttgtattggacatttgtttaagaaggtagggtacactcttagacaacacca |
27514584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 27468957 - 27468777
Alignment:
| Q |
19 |
acatcagcattatcataatgaagaagacatgtctaaagcatgtttcaaacattatgaagtacaccaattaaatcatcaacaaatatgaggttgcac---- |
114 |
Q |
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||||| ||||||||||||||||||| |||||||| |||||||||| || |||||||||||||||||||||||||| || |||||||||| ||||| |
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| T |
27468957 |
acatcggcattatcataatgaagaaaacatgtctgaagcatgtttacaaaattatgaagtacaccaattaaatcatgaagaaatatgaggctgcacttga |
27468858 |
T |
|
| Q |
115 |
----atctcatttggtagcaagtggaagctttgtattggaca-ttgtttaagaaggtagggtacactcttagacaacacca |
190 |
Q |
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| T |
27468857 |
gcacatctcatttggtagcaagtggaagctttgtattggacatttgtttaagaaggtagggtacactcttagacaacacca |
27468777 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 27524042 - 27524223
Alignment:
| Q |
17 |
ggacatcagcattatcataatgaagaagacatgtctaaagcatgtttcaaacattatgaagtacaccaattaaatcatcaacaaatatgaggttgcac-- |
114 |
Q |
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||||||||||||||||||||||||||| |||||||| |||||||||| | ||||||||| | |||||||||||||| || |||||||| ||||||| |
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| T |
27524042 |
ggacatcagcattatcataatgaagaaaacatgtctgaagcatgtttacgaaattatgaaggaaaccaattaaatcatgaagaaatatgacgttgcactt |
27524141 |
T |
|
| Q |
115 |
------atctcatttggtagcaagtggaagctttgtattggacattgtttaagaaggtagggtacactcttagacaacacca |
190 |
Q |
| |
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||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
27524142 |
gagcacatctcatttggtagcaattggaagctttgtattggatattgtttaagaaggtagggtacactctaagacaacacca |
27524223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 27508488 - 27508565
Alignment:
| Q |
113 |
acatctcatttggtagcaagtggaagctttgtattggacattgtttaagaaggtagggtacactcttagacaacacca |
190 |
Q |
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| T |
27508488 |
acatctcatttggtaggaagtggaagctttgtattggacattgtttaagaaggtagggtacactctaagacagcacca |
27508565 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 27503443 - 27503622
Alignment:
| Q |
17 |
ggacatcagcattatcataatgaagaagacatgtctaaagcatgtttcaaacattatgaagtacaccaattaaatcatcaacaaatatgagg------tt |
110 |
Q |
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|||||||| |||||||||||||||||| |||||||| |||||||||| || ||||| | | | ||||||||||| ||||||||||||| || |
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| T |
27503443 |
ggacatcaacattatcataatgaagaaaacatgtctgaagcatgtttacaaaattattga---cgctaattaaatcatgaacaaatatgaggctatactt |
27503539 |
T |
|
| Q |
111 |
g--cacatctcatttggtagcaagtggaagctttgtattggacattgtttaag-aaggtagggtacactcttagacaacacca |
190 |
Q |
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| T |
27503540 |
gatcacatcttattttttagcaagtggaagctttgtattggacattgtttaggaaaggtaggggacactctaagacaacacca |
27503622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 27476187 - 27476011
Alignment:
| Q |
19 |
acatcagcattatcataatgaagaagacatgtctaaagcatgtttcaaacattatgaagtacaccaattaaatcatcaacaaatatgagg------ttg- |
111 |
Q |
| |
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||||| ||||||||||||||||||| |||||||| ||||||| || || ||||| | | | ||||||||||| ||||||||||||| ||| |
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| T |
27476187 |
acatcggcattatcataatgaagaaaacatgtctgaagcatgcttacaaaattattga---cgctaattaaatcatgaacaaatatgaggctatacttga |
27476091 |
T |
|
| Q |
112 |
-cacatctcatttggtagcaagtggaagctttgtattggacattgtttaag-aaggtagggtacactcttagacaacacc |
189 |
Q |
| |
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||||||| |||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||| |
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| T |
27476090 |
tcacatcttattttttagcaagtggaagctttgtattggacattgtttaggaaaggtagggtacactctaagacaacacc |
27476011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 27489629 - 27489723
Alignment:
| Q |
17 |
ggacatcagcattatcataatgaagaagacatgtctaaagcatgtttcaaacattatgaagtacaccaattaaatcatcaacaaatatgaggttgca |
113 |
Q |
| |
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||||||| |||| ||||||||||||| ||||||||||||||||||| || |||| |||| ||||||||| ||| || ||||||||||||||| |
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| T |
27489629 |
ggacatcgacattttcataatgaagaaaacatgtctaaagcatgtttacaaaattacaaagt--accaattaatgcatgaataaatatgaggttgca |
27489723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 27508426 - 27508486
Alignment:
| Q |
17 |
ggacatcagcattatcataatgaagaagacatgtctaaagcatgtttcaaacattatgaag |
77 |
Q |
| |
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||||||||||||| ||||||||||||| |||||||| ||||||||| || ||||||||| |
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| T |
27508426 |
ggacatcagcattgtcataatgaagaaaacatgtcttcagcatgtttataaaattatgaag |
27508486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 27517369 - 27517433
Alignment:
| Q |
116 |
tctcatttggtagcaagtggaagctttgtattggacattgtttaagaaggtagggtacactctta |
180 |
Q |
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||||| ||||| |||||||||||||||| |||| |||||||| ||||||| ||||||| ||||| |
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| T |
27517369 |
tctcaattggttccaagtggaagctttgtgttggccattgtttgagaaggtggggtacaatctta |
27517433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 27557008 - 27556974
Alignment:
| Q |
29 |
tatcataatgaagaagacatgtctaaagcatgttt |
63 |
Q |
| |
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||||||||||||||| ||||||||||||||||||| |
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| T |
27557008 |
tatcataatgaagaaaacatgtctaaagcatgttt |
27556974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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