View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261A_low_489 (Length: 204)

Name: NF10261A_low_489
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261A_low_489
NF10261A_low_489
[»] chr1 (4 HSPs)
chr1 (24-204)||(18438572-18438749)
chr1 (24-204)||(18449430-18449607)
chr1 (24-204)||(18454523-18454700)
chr1 (125-176)||(42080703-42080754)
[»] chr2 (6 HSPs)
chr2 (24-202)||(31320228-31320417)
chr2 (32-186)||(9446963-9447128)
chr2 (125-183)||(21949909-21949967)
chr2 (125-173)||(14555896-14555944)
chr2 (24-67)||(38346614-38346657)
chr2 (125-185)||(13698129-13698189)
[»] chr5 (3 HSPs)
chr5 (30-193)||(31610025-31610199)
chr5 (124-179)||(11888191-11888246)
chr5 (125-176)||(33417438-33417489)
[»] chr7 (4 HSPs)
chr7 (125-173)||(8425057-8425105)
chr7 (31-185)||(30559269-30559434)
chr7 (125-176)||(49094557-49094608)
chr7 (125-176)||(38836146-38836197)
[»] chr6 (1 HSPs)
chr6 (124-176)||(6982841-6982893)
[»] chr4 (3 HSPs)
chr4 (125-176)||(2048991-2049042)
chr4 (125-176)||(39735820-39735871)
chr4 (125-174)||(3958957-3959006)
[»] scaffold0141 (1 HSPs)
scaffold0141 (125-173)||(16545-16593)
[»] chr8 (1 HSPs)
chr8 (126-171)||(19168189-19168234)
[»] chr3 (1 HSPs)
chr3 (125-185)||(3830691-3830751)


Alignment Details
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 24 - 204
Target Start/End: Complemental strand, 18438749 - 18438572
Alignment:
Q  24 ctatcccactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtc 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  18438749 ctatcccactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaac---tgcaagatatggaactttcaacaagacagtc 18438653  T
Q  124 agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgcttcttatgactgcctcct 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18438652 agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgattcttatgactgcctcct 18438572  T

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Target: chr1; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 24 - 204
Target Start/End: Complemental strand, 18449607 - 18449430
Alignment:
Q  24 ctatcccactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtc 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  18449607 ctatcccactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaac---tgcaagatatggaactttcaacaagacagtc 18449511  T
Q  124 agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgcttcttatgactgcctcct 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18449510 agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgattcttatgactgcctcct 18449430  T

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Target: chr1; HSP #3
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 24 - 204
Target Start/End: Complemental strand, 18454700 - 18454523
Alignment:
Q  24 ctatcccactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtc 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  18454700 ctatcccactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaac---tgcaagatatggaactttcaacaagacagtc 18454604  T
Q  124 agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgcttcttatgactgcctcct 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18454603 agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgattcttatgactgcctcct 18454523  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 176
Target Start/End: Original strand, 42080703 - 42080754
Alignment:
Q  125 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 176  Q
    ||||||||||||| |||||||||||||||||  |||| ||||||||||||||    
T  42080703 gattgcttttgattacaccctttttggaacgagtttggatgtgctcactact 42080754  T

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Target: chr2 (Bit Score: 112; Significance: 8e-57; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 24 - 202
Target Start/End: Complemental strand, 31320417 - 31320228
Alignment:
Q  24 ctatcccactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtc 123  Q
    ||||||||||||||||||||||||||||||||| |||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31320417 ctatcccactaagatagattcagcaaccatctagaatagcagaagatgaacccaaataagaacaacaactgcaagatatggaactttcaacaagacaatc 31320318  T
Q  124 a-----------gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgcttcttatgactgcctc 202  Q
    |           |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||| ||| |||||||    
T  31320317 acatatatttgggattgcttttgatcacaccctttttggaacgcgtttgtatgagctcactactagtgtattgcttctgatgtctgcctc 31320228  T

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Target: chr2; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 32 - 186
Target Start/End: Complemental strand, 9447128 - 9446963
Alignment:
Q  32 ctaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtca------- 124  Q
    |||||||||||||||| |||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||           
T  9447128 ctaagatagattcagccaccatccaaaataacagaagttgaacccacataagaacaacaactgcaagatatggaactttcaacaagacagtcacatatat 9447029  T
Q  125 ----gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgc 186  Q
        |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  9447028 ttgggattgcttttgatcacaccctttttggaacgcgtttgtgtgtgctcactactagtgttttgc 9446963  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 21949909 - 21949967
Alignment:
Q  125 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttt 183  Q
    ||||||||||||| ||||||||||| |||||  ||||||||||||||||||||||||||    
T  21949909 gattgcttttgattacaccctttttagaacgagtttgtatgtgctcactactagtgttt 21949967  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 14555944 - 14555896
Alignment:
Q  125 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcact 173  Q
    |||||||||||||||||||||||||||||||  ||||||| || |||||    
T  14555944 gattgcttttgatcacaccctttttggaacgagtttgtatatgatcact 14555896  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 38346614 - 38346657
Alignment:
Q  24 ctatcccactaagatagattcagcaaccatctaaaataacagaa 67  Q
    ||||||||| ||||||||||||||||||| | ||||||||||||    
T  38346614 ctatcccaccaagatagattcagcaaccaaccaaaataacagaa 38346657  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 13698189 - 13698129
Alignment:
Q  125 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttg 185  Q
    ||||||||||||||||||||||  ||||||   |||| |||||||||||||| ||| ||||    
T  13698189 gattgcttttgatcacacccttcatggaaccagtttgaatgtgctcactacttgtgctttg 13698129  T

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Target: chr5 (Bit Score: 109; Significance: 5e-55; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 30 - 193
Target Start/End: Complemental strand, 31610199 - 31610025
Alignment:
Q  30 cactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtc------ 123  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||          
T  31610199 cactaagatagattcagcaaccatctaaaatatcagaagttgaacccaaataagaacaacaactacaaaatatggaactttcaacaagacagtcgcatat 31610100  T
Q  124 -----agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgcttcttat 193  Q
          ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  31610099 atttgggattgcttttgatcacaccctttttagaacgcgtttgtatgtgctcactactagtgttttgcttcttat 31610025  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 11888191 - 11888246
Alignment:
Q  124 agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagt 179  Q
    ||||||||||||||||||||||| ||||||||  ||||||| ||||||||||||||    
T  11888191 agattgcttttgatcacacccttcttggaacgaatttgtatatgctcactactagt 11888246  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 125 - 176
Target Start/End: Complemental strand, 33417489 - 33417438
Alignment:
Q  125 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 176  Q
    |||| |||||||| ||||||||||| |||||  |||||||||||||||||||    
T  33417489 gattacttttgattacaccctttttagaacgaatttgtatgtgctcactact 33417438  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 8425105 - 8425057
Alignment:
Q  125 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcact 173  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||    
T  8425105 gattgcttttgatcacacccttcttggaacgagtttgtatgtgctcact 8425057  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 185
Target Start/End: Original strand, 30559269 - 30559434
Alignment:
Q  31 actaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtca------ 124  Q
    |||||||||||||||||||||| | |||||||||||||  |||  |||||| ||||| ||||||||  |||  ||||| |||||| ||| ||||          
T  30559269 actaagatagattcagcaaccacccaaaataacagaagccgaaaccaaatatgaacagcaactgcagaatacagaactgtcaacatgaccgtcacaaatc 30559368  T
Q  125 -----gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttg 185  Q
         ||||||||||||| ||||||||||||||||   ||| ||||||||||| ||| ||| ||||    
T  30559369 tttgggattgcttttgataacaccctttttggaacaagtttctatgtgctcacgacttgtgctttg 30559434  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 176
Target Start/End: Original strand, 49094557 - 49094608
Alignment:
Q  125 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 176  Q
    ||||||||||||| ||||| |||||||||||  |||||||||||||||||||    
T  49094557 gattgcttttgataacaccttttttggaacgtgtttgtatgtgctcactact 49094608  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 125 - 176
Target Start/End: Complemental strand, 38836197 - 38836146
Alignment:
Q  125 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 176  Q
    ||||||||||||| ||||| |||||||||||  ||||||| |||||||||||    
T  38836197 gattgcttttgataacaccatttttggaacgagtttgtatatgctcactact 38836146  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 6982893 - 6982841
Alignment:
Q  124 agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 176  Q
    |||||||||||||| ||||||||||| |||||  |||||||||||||||||||    
T  6982893 agattgcttttgattacacccttttttgaacgagtttgtatgtgctcactact 6982841  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 176
Target Start/End: Complemental strand, 2049042 - 2048991
Alignment:
Q  125 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 176  Q
    ||||||||||||| |||||||||||||||||  ||||||| |||||||||||    
T  2049042 gattgcttttgataacaccctttttggaacgagtttgtatatgctcactact 2048991  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 176
Target Start/End: Complemental strand, 39735871 - 39735820
Alignment:
Q  125 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 176  Q
    ||||||||||||| |||||||| ||||||||  |||||||||||||||||||    
T  39735871 gattgcttttgattacacccttcttggaacgagtttgtatgtgctcactact 39735820  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 3958957 - 3959006
Alignment:
Q  125 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcacta 174  Q
    ||||||||||||| ||||||||||| |||||  |||||||||||||||||    
T  3958957 gattgcttttgatgacaccctttttagaacgagtttgtatgtgctcacta 3959006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 16545 - 16593
Alignment:
Q  125 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcact 173  Q
    |||||||||||||||||||||| ||||||||  ||| ||||||||||||    
T  16545 gattgcttttgatcacacccttcttggaacgagtttatatgtgctcact 16593  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 19168234 - 19168189
Alignment:
Q  126 attgcttttgatcacaccctttttggaacgcttttgtatgtgctca 171  Q
    |||||||||||| ||||||||||| |||||  ||||||||||||||    
T  19168234 attgcttttgatgacaccctttttagaacgagtttgtatgtgctca 19168189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 3830691 - 3830751
Alignment:
Q  125 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttg 185  Q
    |||||||||||||||||| |||  |||||||  |||| |||||||||||||| ||| ||||    
T  3830691 gattgcttttgatcacactcttcatggaacgagtttgaatgtgctcactacttgtgctttg 3830751  T

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