View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_49 (Length: 393)
Name: NF10261A_low_49
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_49 |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 27 - 384
Target Start/End: Original strand, 33790832 - 33791189
Alignment:
| Q |
27 |
atttttaggaagctgcatatttatcttactctacacatatacttaccaaaatataaaatattttgtcatgaccaatttggttgatttaatttcaggggtg |
126 |
Q |
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| T |
33790832 |
atttttaggcagctgcatatttatcttactctacacatatacttaccaaaatatacaatattttgtcatgaccaatttggttgatttaatttcaggggtg |
33790931 |
T |
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| Q |
127 |
tgacgcatccatattaatagactcaaagatgggcaatgaatcagagaaagcagcaagagcaaaccttactgtaagaggatataacctcatagatgaaatc |
226 |
Q |
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| T |
33790932 |
tgacgcatccatattaatagactcaaagaagggcaatgaatcagagaaagcagcaagagcaaaccttactgtaagaggatataacctcatagatgaaatc |
33791031 |
T |
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| Q |
227 |
aaaagaatcctagaaaatgcatgtccatcaacagtttcatgtgcagacataatatcattagcaacaagagattcagttgtcttagcaggtggaccaagtt |
326 |
Q |
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| T |
33791032 |
aaaagaatcctagaaaatgcatgtccatcaacagtttcatgtgcagacataatatcattagcaacaagagattctgttgtcttagcaggtggaccaagtt |
33791131 |
T |
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| Q |
327 |
acaatgttcctacaggaagacgtgatggattagtatcaactgttaatgatgtccatct |
384 |
Q |
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| T |
33791132 |
acaatgttcctacaggaagacgtgatggattagtatcaactgttaatgatgtacatct |
33791189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 358
Target Start/End: Complemental strand, 33764212 - 33764098
Alignment:
| Q |
244 |
tgcatgtccatcaacagtttcatgtgcagacataatatcattagcaacaagagattcagttgtcttagcaggtggaccaagttacaatgttcctacagga |
343 |
Q |
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| T |
33764212 |
tgcatgtccatcaacggtttcatgtgcagacatcgtagcacttgctacaagagatgctgtggccttatctggaggaccaaaatacaatattcctacagga |
33764113 |
T |
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| Q |
344 |
agacgtgatggatta |
358 |
Q |
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| T |
33764112 |
agacgtgacggatta |
33764098 |
T |
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